CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1611092_at

Gene name
Homology with Arabidopsis Similar to At3g51890: protein binding / structural molecule (HF=3e-1)

Module size 6 genes

NF 0.15

%ile 23.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 75.2 0.94 1611092_at CF208653 - - 3e-1 At3g51890 protein binding / structural molecule O.I. H.G. S.X.
0.44 64.1 0.94 1611089_at CF518359 hypothetical protein LOC100245763 /// hypothetical protein LOC100250595 - 1e+0 At5g49665 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.29 37.7 0.95 1610473_at CD008037 hypothetical protein LOC100259805 - 3e-1 At3g10980 unknown protein O.I. H.G. S.X.
0.22 25.6 0.94 1621827_at CF373383 similar to flowering locus C-like MADS-box protein - 4e-11 At2g45650 AGL6 (AGAMOUS-LIKE 6) O.I. H.G. S.X.
0.10 10.3 0.95 1619464_at CA818609 hypothetical protein LOC100254564 - 3e-11 At1g79160 unknown protein O.I. H.G. S.X.
0.06 6.8 0.95 1621556_s_at CB980317 hypothetical protein LOC100246330 /// hypothetical protein LOC100266521 - 2e-4 At2g22430 ATHB6 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.2 97.1 GSM436420 V. riparia (VR, PI588259) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM287895 Pink soft berry B13 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436419 V. riparia (VR, PI588259) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM287882 Green soft berry A21 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436399 V. riparia (VR, PI588259) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the rice gene, Os01g0507000, orthologous to the query gene, 1611092_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.95 99.6 Os01g0507000 At3g51890 - Hypothetical protein 2e+0 At1g61093 unknown protein O.I. H.G. S.X.
0.48 63.7 Os07g0484600 At3g51890 - Hypothetical protein 7e-2 At3g27290 F-box family protein-related O.I. H.G. S.X.
0.22 19.4 Os02g0227400 At3g51890 - Poly(A) polymerase, RNA-binding region domaincontaining protein 1e-19 At2g25850 nucleotidyltransferase family protein O.I. H.G. S.X.
0.18 13.7 Os10g0167600 At3g51890 - CPD photolyase 3e-31 At1g12370 PHR1 (PHOTOLYASE 1) O.I. H.G. S.X.
0.15 10.3 Os07g0618500 At3g51890 - Folate synthesis protein precursor [INCLUDES:2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase (EC 2.7.6.3) (HPPK) 7e-6 At1g53450 unknown protein O.I. H.G. S.X.
0.15 10.3 Os01g0636700 At3g51890 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 1e-1 At5g45600 GAS41 O.I. H.G. S.X.
0.14 9.3 Os03g0174600 At3g51890 - contains InterPro domain(s): IPR004506 2e-10 At1g51310 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase O.I. H.G. S.X.
0.09 4.9 Os05g0121400 At3g51890 - - 9e-1 At5g51680 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.08 4.2 Os11g0297900 At3g51890 - Pre-mRNA splicing protein family protein 2e+0 At3g24730 catalytic O.I. H.G. S.X.
0.06 3.0 Os09g0504800 At3g51890 - Hypothetical protein 2e+0 At5g10970 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.05 2.5 Os12g0613200 At3g51890 - Trithorax protein 6e-4 At5g42400 SDG25 (SET DOMAIN PROTEIN 25) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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