Co-expression analysis

Gene ID	1611092_at
Gene name
Homology with Arabidopsis	Similar to At3g51890: protein binding / structural molecule (HF=3e-1)
Module size	6 genes
NF	0.15
%ile	23.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.94	1611092_at	CF208653	-	-	3e-1	At3g51890	protein binding / structural molecule	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.94	1611089_at	CF518359	hypothetical protein LOC100245763 /// hypothetical protein LOC100250595	-	1e+0	At5g49665	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.95	1610473_at	CD008037	hypothetical protein LOC100259805	-	3e-1	At3g10980	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.94	1621827_at	CF373383	similar to flowering locus C-like MADS-box protein	-	4e-11	At2g45650	AGL6 (AGAMOUS-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.95	1619464_at	CA818609	hypothetical protein LOC100254564	-	3e-11	At1g79160	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.95	1621556_s_at	CB980317	hypothetical protein LOC100246330 /// hypothetical protein LOC100266521	-	2e-4	At2g22430	ATHB6	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	97.1	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the barley gene, Contig20916_at, orthologous to the query gene, 1611092_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	85.5	Contig20916_at	At3g51890	-	-	3e-1	At5g66160	JR700	O.I.	H.G.	S.X.	Please select
0.96	99.4	Contig3147_at	At3g51890	-	-	3e-4	At1g09940	HEMA2	O.I.	H.G.	S.X.	Please select
0.89	95.4	Contig23108_at	At3g51890	-	-	8e-1	At3g16280	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.89	95.4	Contig3198_at	At3g51890	-	-	6e+0	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please select
0.86	94.8	Contig21607_at	At3g51890	-	-	2e+1	At5g50710	unknown protein	O.I.	H.G.	S.X.	Please select
0.85	94.5	Contig18000_at	At3g51890	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig26171_at	At3g51890	-	-	2e+0	At1g52580	ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig2160_at	At3g51890	-	-	2e-34	At4g38920	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	O.I.	H.G.	S.X.	Please select
0.81	92.8	Contig10718_at	At3g51890	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	O.I.	H.G.	S.X.	Please select
0.80	92.5	Contig5460_s_at	At3g51890	-	-	8e-3	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	Contig5241_at	At3g51890	-	-	8e-2	At5g08790	ATAF2	O.I.	H.G.	S.X.	Please select
0.75	89.5	Contig7079_at	At3g51890	-	-	3e-3	At2g18980	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig25706_at	At3g51890	-	-	3e-1	At2g37000	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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