Co-expression analysis

Gene ID	1611092_at
Gene name
Homology with Arabidopsis	Similar to At3g51890: protein binding / structural molecule (HF=3e-1)
Module size	6 genes
NF	0.15
%ile	23.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.94	1611092_at	CF208653	-	-	3e-1	At3g51890	protein binding / structural molecule	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.94	1611089_at	CF518359	hypothetical protein LOC100245763 /// hypothetical protein LOC100250595	-	1e+0	At5g49665	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.95	1610473_at	CD008037	hypothetical protein LOC100259805	-	3e-1	At3g10980	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.94	1621827_at	CF373383	similar to flowering locus C-like MADS-box protein	-	4e-11	At2g45650	AGL6 (AGAMOUS-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.95	1619464_at	CA818609	hypothetical protein LOC100254564	-	3e-11	At1g79160	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.95	1621556_s_at	CB980317	hypothetical protein LOC100246330 /// hypothetical protein LOC100266521	-	2e-4	At2g22430	ATHB6	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	97.1	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.69001.1.S1_at, orthologous to the query gene, 1611092_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.8	GmaAffx.69001.1.S1_at	At3g51890	-	-	7e+0	Atmg01030	-	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.17649.1.S1_at	At3g51890	-	-	7e-10	At1g12780	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.3499.1.S1_s_at	At3g51890	-	-	1e-8	At1g50920	GTP-binding protein-related	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.3200.1.S1_at	At3g51890	-	-	9e-6	At5g10350	polyadenylate-binding protein family protein / PABP family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.12661.1.S1_at	At3g51890	-	-	4e+0	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.6144.1.S1_at	At3g51890	-	-	1e-1	At3g02670	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.10136.1.S1_at	At3g51890	-	-	7e-8	At4g35905	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.2298.1.S1_at	At3g51890	-	-	3e-4	At1g49400	emb1129 (embryo defective 1129)	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.7420.1.S1_at	At3g51890	-	-	2e-50	At3g14100	oligouridylate-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.24	30.9	GmaAffx.85577.1.S1_at	At3g51890	-	-	1e-16	At4g16360	AMP-activated protein kinase	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.9729.1.S1_at	At3g51890	-	-	1e-6	At4g35905	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	GmaAffx.1301.41.S1_at	At3g51890	-	-	4e-14	At1g76010	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.2044.3.S1_at	At3g51890	-	-	3e-92	At4g16340	SPK1 (SPIKE1)	O.I.	H.G.	S.X.	Please select
0.19	23.7	Gma.16543.1.S1_at	At3g51890	-	-	1e-1	At1g71080	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	Gma.7296.1.S1_at	At3g51890	-	-	4e-20	At3g63290	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	Gma.9628.1.S1_at	At3g51890	-	-	6e-1	At5g04920	vacuolar protein sorting 36 family protein / VPS36 family protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	Gma.13182.1.S1_at	At3g51890	-	-	5e-34	At2g33740	CUTA	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.59215.1.S1_at	At3g51890	-	-	2e+0	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.8233.1.S1_at	At3g51890	-	-	6e+0	At5g67010	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.73640.1.S1_at	At3g51890	-	-	2e-9	At3g06820	mov34 family protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.2047.1.S1_at	At3g51890	homeobox-leucine zipper protein homolog; Method: conceptual translation supplied by author	-	2e-13	At4g16780	ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.16	19.7	Gma.5674.1.S1_a_at	At3g51890	-	-	4e-36	At3g58610	ketol-acid reductoisomerase	O.I.	H.G.	S.X.	Please select
0.16	19.7	Gma.5671.1.S1_at	At3g51890	-	-	2e+0	At2g31740	methyltransferase	O.I.	H.G.	S.X.	Please select
0.15	18.7	GmaAffx.8145.1.S1_at	At3g51890	-	-	5e+0	At1g14600	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.14	17.5	Gma.16975.1.S1_at	At3g51890	-	-	1e-31	At1g55350	DEK1 (DEFECTIVE KERNEL 1)	O.I.	H.G.	S.X.	Please select
0.13	16.3	GmaAffx.66858.2.S1_at	At3g51890	-	-	5e-23	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.12	15.1	Gma.10486.1.S1_at	At3g51890	-	-	1e-88	At4g09980	EMB1691 (EMBRYO DEFECTIVE 1691)	O.I.	H.G.	S.X.	Please select
0.10	13.0	Gma.14636.1.S1_at	At3g51890	-	-	5e-4	At3g15090	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.10	13.0	Gma.13514.1.A1_at	At3g51890	-	-	2e-4	At4g30850	HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)	O.I.	H.G.	S.X.	Please select
0.09	12.0	Gma.10878.1.S1_at	At3g51890	-	-	3e+0	At5g13430	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.	Please select
0.07	10.2	Gma.10758.1.S1_s_at	At3g51890	-	-	5e-3	At5g55660	-	O.I.	H.G.	S.X.	Please select
0.05	8.0	Gma.18055.1.S1_at	At3g51890	-	-	7e-49	At5g48870	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)	O.I.	H.G.	S.X.	Please select
0.04	7.0	GmaAffx.4271.2.S1_at	At3g51890	-	-	9e-1	At5g07730	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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