Co-expression analysis

Gene ID	1611078_a_at
Gene name	hypothetical protein LOC100260925
Homology with Arabidopsis	Similar to At1g32230: RCD1 (RADICAL-INDUCED CELL DEATH1) (HF=1e-7)
Module size	6 genes
NF	0.64
%ile	90.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.98	1611078_a_at	CF518728	hypothetical protein LOC100260925	-	1e-7	At1g32230	RCD1 (RADICAL-INDUCED CELL DEATH1)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.98	1617898_at	CF605263	hypothetical protein LOC100244372	-	3e-1	At5g49610	F-box family protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.98	1612066_at	CF607715	beclin 1 protein	-	5e-48	At3g61710	autophagy protein Apg6 family	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.98	1609756_at	CF604406	hypothetical protein LOC100263684	-	6e-3	At1g18830	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.98	1617936_at	BQ797736	similar to 26S proteasome subunit RPN5b	-	3e-23	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1620627_at	CF214379	hypothetical protein LOC100259195	-	1e-22	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.6	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.3	90.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.0	88.2	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
2.0	88.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.9	87.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.9	87.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.9	87.2	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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