Co-expression analysis

Gene ID	1611054_at
Gene name
Homology with Arabidopsis	Similar to Atmg01290: - (HF=4e+0)
Module size	7 genes
NF	0.21
%ile	30.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.0	0.95	1611054_at	CF516017	-	-	4e+0	Atmg01290	-	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	1612046_at	CD800218	hypothetical protein LOC100249809	-	7e-14	At5g51280	DEAD-box protein abstrakt, putative	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.97	1612341_s_at	CB343756	-	-	8e-95	Atcg00360	-	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.97	1613440_at	CB976741	hypothetical protein LOC100252018	-	4e-10	At1g53450	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.97	1613801_at	CF514247	hypothetical protein LOC100240794	-	1e+0	At3g59960	ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4)	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.98	1619694_at	CF516591	hypothetical protein LOC100256726	-	3e-1	At2g29980	FAD3 (FATTY ACID DESATURASE 3)	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.98	1617034_at	CB342279	hypothetical protein LOC100248287	-	1e+0	At5g09480	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.7	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6	96.0	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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