Co-expression analysis

Gene ID	1611053_at
Gene name
Homology with Arabidopsis	Similar to At5g28540: BIP1 (HF=1e-15)
Module size	11 genes
NF	0.27
%ile	38.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	0.92	1611053_at	CF405013	-	-	1e-15	At5g28540	BIP1	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.93	1613263_at	CB918718	-	-	2e-12	At4g16580	catalytic	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.94	1607830_at	CF568994	-	-	2e-72	At3g22110	PAC1	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.94	1613526_at	CF568881	-	-	2e-88	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.95	1618102_at	CF415084	-	-	7e-37	At2g18710	SCY1 (SecY Homolog 1)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.94	1613383_at	CB922386	-	-	5e-68	At5g45390	CLPP4 (CLP PROTEASE P4)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.95	1617721_at	CF568847	-	-	1e-76	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.95	1619724_at	CA818237	-	-	1e-23	At5g27640	TIF3B1 (TRANSLATION INITIATION FACTOR 3B1)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.95	1617607_at	CB918932	-	-	3e-2	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.94	1608570_at	CD717861	-	-	1e-3	At3g48590	NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.94	1620794_at	CF568783	-	-	3e-13	At4g15000	60S ribosomal protein L27 (RPL27C)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.7	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.6	83.3	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.6	83.3	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
1.5	81.7	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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