CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1610908_at

Gene name hypothetical protein LOC100250738
Homology with Arabidopsis Similar to At2g18320: - (HF=1e+0)

Module size 13 genes

NF 0.50

%ile 75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 93.6 0.98 1610908_at CF515504 hypothetical protein LOC100250738 - 1e+0 At2g18320 - O.I. H.G. S.X.
0.64 84.7 0.99 1616080_at CF511120 hypothetical protein LOC100254062 - 5e-13 At5g42970 COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) O.I. H.G. S.X.
0.59 80.6 0.98 1609434_at CF211782 hypothetical protein LOC100240790 - 1e-41 At3g42050 vacuolar ATP synthase subunit H family protein O.I. H.G. S.X.
0.53 75.2 0.98 1617538_at CF213742 hypothetical protein LOC100252692 - 1e+0 At5g17190 unknown protein O.I. H.G. S.X.
0.52 73.9 0.98 1608103_at CD801640 hypothetical protein LOC100266523 - 3e-61 At2g47060 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.50 72.7 0.99 1614380_at CD797929 hypothetical protein LOC100267715 - 2e-1 At2g17770 ATBZIP27 O.I. H.G. S.X.
0.47 67.7 0.98 1620593_at BQ797219 hypothetical protein LOC100252659 - 1e-97 At1g30580 GTP binding O.I. H.G. S.X.
0.47 67.7 0.98 1609890_s_at CA817702 hypothetical protein LOC100252402 - 5e-53 At2g04520 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative O.I. H.G. S.X.
0.45 64.6 0.99 1612642_at CB970994 hypothetical protein LOC100244706 - 5e+0 At3g43570 GDSL-motif lipase, putative O.I. H.G. S.X.
0.41 58.7 0.98 1619510_s_at BQ800430 hypothetical protein LOC100252419 - 4e+0 At5g43720 unknown protein O.I. H.G. S.X.
0.41 58.7 0.98 1616827_at BQ793335 hypothetical protein LOC100254067 - 6e-27 At4g24550 clathrin adaptor complexes medium subunit family protein O.I. H.G. S.X.
0.35 48.5 0.99 1610335_s_at CF511082 hypothetical protein LOC100257917 - 7e-6 At4g14300 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative O.I. H.G. S.X.
0.21 24.0 0.99 1606962_at CF405430 hypothetical protein LOC100244131 - 4e-13 At5g14240 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.5 95.7 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
2.1 89.1 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
2.0 88.2 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.0 88.2 GSM147685 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 14
2.0 88.2 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM147684 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 13
1.9 87.2 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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