Co-expression analysis

Gene ID 1610821_at
Gene name hypothetical protein LOC100253493
Homology with ArabidopsisSimilar to At2g30490: C4H (CINNAMATE-4-HYDROXYLASE) (HF=6e-48)
Module size 8 genes
NF 0.57
%ile 83.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5779.80.921610821_atCB971061hypothetical protein LOC100253493-6e-48At2g30490C4H (CINNAMATE-4-HYDROXYLASE)O.I.H.G.S.X.
0.6384.30.921616191_s_atCB971061hypothetical protein LOC100253493-6e-48At2g30490C4H (CINNAMATE-4-HYDROXYLASE)O.I.H.G.S.X.
0.6384.30.951614440_atBQ7969223-deoxy-D-arabino-heptulosonate 7-phosphate synthase-2e-53At4g39980DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)O.I.H.G.S.X.
0.6183.20.951616944_atCF211395hypothetical protein LOC100261951-1e-1At5g65400unknown proteinO.I.H.G.S.X.
0.5779.80.941619357_atCB9723163-deoxy-D-arabino-heptulosonate-7-phosphate synthase-3e-71At1g224102-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putativeO.I.H.G.S.X.
0.4260.10.941618362_s_atCF200684.1hypothetical protein LOC100255189-2e-74At1g10670ACLA-1O.I.H.G.S.X.
0.4057.70.951620412_atCF511306hypothetical protein LOC100247288-6e-10At1g36160ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)O.I.H.G.S.X.
0.3650.70.971615742_atCB9706705-enolpyruvylshikimate-3-phosphate synthase-8e-121At2g453003-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.698.4GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.495.5GSM322362genotype: Chardonnay - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.094.2GSM147709Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation38Link to GEO
2.793.0GSM287869Green hard berry C3 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.491.3GSM147675Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation4Link to GEO
2.390.7GSM147692Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation21Link to GEO
2.390.7GSM147674Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation3Link to GEO
2.289.9GSM147699Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation28Link to GEO
2.289.9GSM147680Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation9Link to GEO
2.289.9GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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