Co-expression analysis

Gene ID 1610777_at
Gene name hypothetical protein LOC100263956
Homology with ArabidopsisSimilar to At3g13670: protein kinase family protein (HF=2e-42)
Module size 6 genes
NF 0.61
%ile 88.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.981610777_atCD797701hypothetical protein LOC100263956-2e-42At3g13670protein kinase family proteinO.I.H.G.S.X.
0.6787.90.981612774_atCF210198hypothetical protein LOC100261536-2e+0At5g40900unknown proteinO.I.H.G.S.X.
0.6787.90.981619392_atCF513478hypothetical protein LOC100259847-4e+0At3g24060self-incompatibility protein-relatedO.I.H.G.S.X.
0.5779.80.981614838_atCB977099hypothetical protein LOC100244335-1e-4At1g43640AtTLP5 (TUBBY LIKE PROTEIN 5)O.I.H.G.S.X.
0.4361.50.981620627_atCF214379hypothetical protein LOC100259195-1e-22At1g20110zinc finger (FYVE type) family proteinO.I.H.G.S.X.
0.3345.70.981614946_atCF510992hypothetical protein LOC100258219-8e-64At4g2482026S proteasome regulatory subunit, putative (RPN7)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7390.80.961620958_atCD801330hypothetical protein LOC100251059-1e+0At5g48660-O.I.H.G.S.X.
0.6787.90.951610087_atCB836568hypothetical protein LOC100246114-2e-79At5g42140zinc finger protein, putative / regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.6787.90.981616106_atCB970099hypothetical protein LOC100257573-1e+0At1g09935phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.6081.90.971607595_atCB919699similar to serine/threonine protein phosphatase 1; PP1-5e-43At2g39840TOPP4O.I.H.G.S.X.
0.5779.80.951621222_atCF604570hypothetical protein LOC100250708-2e-3At1g47056VFB1 (VIER F-BOX PROTEINE 1)O.I.H.G.S.X.
0.5577.30.98AFFX-Vvi-actin-5_atactin 1--O.I.H.G.S.X.
0.5375.20.961616274_atCB971992hypothetical protein LOC100258912-7e-46At2g47070SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1)O.I.H.G.S.X.
0.5072.70.941608035_atCF208115hypothetical protein LOC100248116-3e-1At3g02100UDP-glucoronosyl/UDP-glucosyl transferase family proteinO.I.H.G.S.X.
0.5072.70.961610127_atCB920325--1e-1At3g15355UBC25 (UBIQUITIN-CONJUGATING ENZYME 25)O.I.H.G.S.X.
0.5072.70.961613196_atCB977146hypothetical protein LOC100256623-2e-21At1g79840GL2 (GLABRA 2)O.I.H.G.S.X.
0.5072.70.971611921_atCF210910hypothetical protein LOC100262620-8e-11At4g17570zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.4666.50.981612066_atCF607715beclin 1 protein-5e-48At3g61710autophagy protein Apg6 familyO.I.H.G.S.X.
0.4057.70.981609918_atCF414641hypothetical protein LOC100259885-1e-1At3g55460SCL30O.I.H.G.S.X.
0.4057.70.981614708_atCF511068hypothetical protein LOC100248174-2e-55At5g23450ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)O.I.H.G.S.X.
0.4057.70.981616733_s_atCB981317hypothetical protein LOC100255975-1e-3At5g56610dual specificity protein phosphatase family proteinO.I.H.G.S.X.
0.3853.60.941616986_atCF512258hypothetical protein LOC100267539-9e-41At5g51300splicing factor-relatedO.I.H.G.S.X.
0.3853.60.951609443_atCD720324--4e-30At5g16880VHS domain-containing protein / GAT domain-containing proteinO.I.H.G.S.X.
0.3853.60.971607518_atCF511106hypothetical protein LOC100248533-2e-8At3g09550protein bindingO.I.H.G.S.X.
0.3650.70.961615964_atCA810315hypothetical protein LOC100252228-6e+0At5g67520adenylylsulfate kinase, putativeO.I.H.G.S.X.
0.3650.70.961612376_a_atCF208800hypothetical protein LOC100241859-4e+0At1g78600LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1)O.I.H.G.S.X.
0.3650.70.971615757_atCF513784hypothetical protein LOC100251482-7e-8At3g14172-O.I.H.G.S.X.
0.3650.70.971608025_atAW707961hypothetical protein LOC100249311-2e-20At3g54130josephin family proteinO.I.H.G.S.X.
0.3650.70.971616242_atCF213196hypothetical protein LOC100263350-2e-1At4g18500unknown proteinO.I.H.G.S.X.
0.3650.70.981620897_atCF603365similar to F-box-containing protein 2-3e-4At1g06110SKIP16 (SKP1/ASK-interacting protein 16)O.I.H.G.S.X.
0.3650.70.991614631_atCB979660hypothetical protein LOC100254376-1e-137At5g19990RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)O.I.H.G.S.X.
0.3650.70.961618240_atCF211533hypothetical protein LOC100258476-3e-13At1g01650aspartic-type endopeptidase/ peptidaseO.I.H.G.S.X.
0.3650.70.971615096_atCD715675hypothetical protein LOC100262332-4e-7At4g38170FRS9 (FAR1-related sequence 9)O.I.H.G.S.X.
0.3548.50.961620772_atCF607066hypothetical protein LOC100252015-3e-26At5g53620unknown proteinO.I.H.G.S.X.
0.3548.50.981617936_atBQ797736similar to 26S proteasome subunit RPN5b-3e-23At5g64760RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)O.I.H.G.S.X.
0.3345.70.961612020_atCF372179hypothetical protein LOC100255081-6e-9At4g01000ubiquitin family proteinO.I.H.G.S.X.
0.3243.10.941614118_atCD010339--3e-17At2g14910unknown proteinO.I.H.G.S.X.
0.3243.10.961610264_atCB980899similar to putative multidrug resistance-associated protein-5e-34At1g30410ATMRP13O.I.H.G.S.X.
0.3243.10.971621536_atCF514198hypothetical protein LOC100249350-3e-10At1g04230unknown proteinO.I.H.G.S.X.
0.3141.30.971607886_atCF604620hypothetical protein LOC100255368-1e-9At3g19760eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.3141.30.951610256_atCD711629--2e-15At4g26701DNA binding / DNA topoisomerase type IO.I.H.G.S.X.
0.3141.30.961608012_atCF209500hypothetical protein LOC100255371-1e-6At3g51110crooked neck protein, putative / cell cycle protein, putativeO.I.H.G.S.X.
0.3141.30.971613733_atCB345957hypothetical protein LOC100243231-1e-6At5g59210myosin heavy chain-relatedO.I.H.G.S.X.
0.3141.30.981608708_atCF211873hypothetical protein LOC100255983-2e-9At4g29680type I phosphodiesterase/nucleotide pyrophosphatase family proteinO.I.H.G.S.X.
0.3141.30.981614249_atCF603283similar to AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding-5e-85At4g28470RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B)O.I.H.G.S.X.
0.3039.40.961607318_a_atCB981590hypothetical protein LOC100264625-2e-1At1g25520unknown proteinO.I.H.G.S.X.
0.3039.40.971615412_atBQ796592hypothetical protein LOC100263354-2e-2At5g59710VIP2 (VIRE2 INTERACTING PROTEIN2)O.I.H.G.S.X.
0.2937.70.971609180_atCD719738hypothetical protein LOC100252789-3e-32At5g27620CYCHO.I.H.G.S.X.
0.2937.70.951607324_atCD719348hypothetical protein LOC100244533-1e-13At3g26720glycosyl hydrolase family 38 proteinO.I.H.G.S.X.
0.2937.70.961611520_atCD008875hypothetical protein LOC100255265-3e-1At2g03020heat shock protein-relatedO.I.H.G.S.X.
0.2937.70.981615617_atCF603834hypothetical protein LOC100249849-2e+0At2g05370-O.I.H.G.S.X.
0.2837.70.961618594_atCD720244hypothetical protein LOC100267905-2e-21At4g33060peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinO.I.H.G.S.X.
0.2734.00.951617679_atCF606638hypothetical protein LOC100264890-4e-65At4g02930elongation factor Tu, putative / EF-Tu, putativeO.I.H.G.S.X.
0.2734.00.981616029_atCF517754hypothetical protein LOC100252142-1e+0At5g55940emb2731 (embryo defective 2731)O.I.H.G.S.X.
0.2632.00.951619166_atCF515677hypothetical protein LOC100263264-3e-13At4g11860-O.I.H.G.S.X.
0.2632.00.961612080_atCA817072hypothetical protein LOC100263247-3e-2At1g20770unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.395.2GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.491.3GSM287903Red soft berry A7 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.491.3GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.390.7GSM436381Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM287884Green soft berry C7 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.088.2GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM287885Green soft berry A22 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.088.2GSM287869Green hard berry C3 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.088.2GSM287883Green soft berry A23 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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