Co-expression analysis

Gene ID	1610777_at
Gene name	hypothetical protein LOC100263956
Homology with Arabidopsis	Similar to At3g13670: protein kinase family protein (HF=2e-42)
Module size	6 genes
NF	0.61
%ile	88.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.98	1610777_at	CD797701	hypothetical protein LOC100263956	-	2e-42	At3g13670	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1612774_at	CF210198	hypothetical protein LOC100261536	-	2e+0	At5g40900	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1619392_at	CF513478	hypothetical protein LOC100259847	-	4e+0	At3g24060	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.98	1614838_at	CB977099	hypothetical protein LOC100244335	-	1e-4	At1g43640	AtTLP5 (TUBBY LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.98	1620627_at	CF214379	hypothetical protein LOC100259195	-	1e-22	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1614946_at	CF510992	hypothetical protein LOC100258219	-	8e-64	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the barley gene, Contig12162_at, orthologous to the query gene, 1610777_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	Contig12162_at	At3g13670	-	-	2e-25	At2g25760	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig13282_at	At3g13670	-	-	5e-8	At1g30540	ATPase, BadF/BadG/BcrA/BcrD-type family	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig10280_at	At3g13670	-	-	7e-22	At5g20510	AL5 (ALFIN-LIKE 5)	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig13074_at	At3g13670	-	-	1e-7	At2g37210	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig17107_at	At3g13670	-	-	5e+0	At1g64628	CPuORF57 (Conserved peptide upstream open reading frame 57)	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig10459_at	At3g13670	-	-	2e+0	At5g49710	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig13811_at	At3g13670	-	-	4e-2	At2g20630	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig16509_at	At3g13670	-	-	1e-4	At1g74260	PUR4 (purine biosynthesis 4)	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig12026_at	At3g13670	-	-	3e-2	At4g32714	SCRL25 (SCR-Like 25)	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig6477_s_at	At3g13670	-	-	4e+0	At4g22800	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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