Co-expression analysis

Gene ID	1610777_at
Gene name	hypothetical protein LOC100263956
Homology with Arabidopsis	Similar to At3g13670: protein kinase family protein (HF=2e-42)
Module size	6 genes
NF	0.61
%ile	88.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.98	1610777_at	CD797701	hypothetical protein LOC100263956	-	2e-42	At3g13670	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1612774_at	CF210198	hypothetical protein LOC100261536	-	2e+0	At5g40900	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1619392_at	CF513478	hypothetical protein LOC100259847	-	4e+0	At3g24060	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.98	1614838_at	CB977099	hypothetical protein LOC100244335	-	1e-4	At1g43640	AtTLP5 (TUBBY LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.98	1620627_at	CF214379	hypothetical protein LOC100259195	-	1e-22	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1614946_at	CF510992	hypothetical protein LOC100258219	-	8e-64	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the soybean gene, Gma.1066.1.S1_at, orthologous to the query gene, 1610777_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	Gma.1066.1.S1_at	At3g13670	-	-	4e-67	At3g13670	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.68953.1.S1_at	At3g13670	-	-	8e-46	At5g50000	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.10927.1.S1_at	At3g13670	-	-	2e-7	At5g45160	root hair defective 3 GTP-binding (RHD3) family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.5346.2.S1_a_at	At3g13670	-	-	3e+0	At4g19570	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.2064.1.S1_at	At3g13670	-	-	5e-67	At4g18710	BIN2 (BRASSINOSTEROID-INSENSITIVE 2)	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.9211.1.S1_at	At3g13670	-	-	6e+0	At5g45620	26S proteasome regulatory subunit, putative (RPN9)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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