CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1610777_at

Gene name hypothetical protein LOC100263956
Homology with Arabidopsis Similar to At3g13670: protein kinase family protein (HF=2e-42)

Module size 6 genes

NF 0.61

%ile 88.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.98 1610777_at CD797701 hypothetical protein LOC100263956 - 2e-42 At3g13670 protein kinase family protein O.I. H.G. S.X.
0.67 87.9 0.98 1612774_at CF210198 hypothetical protein LOC100261536 - 2e+0 At5g40900 unknown protein O.I. H.G. S.X.
0.67 87.9 0.98 1619392_at CF513478 hypothetical protein LOC100259847 - 4e+0 At3g24060 self-incompatibility protein-related O.I. H.G. S.X.
0.57 79.8 0.98 1614838_at CB977099 hypothetical protein LOC100244335 - 1e-4 At1g43640 AtTLP5 (TUBBY LIKE PROTEIN 5) O.I. H.G. S.X.
0.43 61.5 0.98 1620627_at CF214379 hypothetical protein LOC100259195 - 1e-22 At1g20110 zinc finger (FYVE type) family protein O.I. H.G. S.X.
0.33 45.7 0.98 1614946_at CF510992 hypothetical protein LOC100258219 - 8e-64 At4g24820 26S proteasome regulatory subunit, putative (RPN7) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 95.2 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.3 90.7 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM287884 Green soft berry C7 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g13670, orthologous to the query gene, 1610777_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.31 33.8 At3g13670 820572 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA O.I. H.G. S.X.
0.67 81.6 At1g33980 840295 Smg-4/UPF3 family protein Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD) O.I. H.G. S.X.
0.67 81.6 At2g25760 817118 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA O.I. H.G. S.X.
0.67 81.6 At5g51340 835208 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB O.I. H.G. S.X.
0.57 73.8 At3g22170 821781 FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3) A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1. O.I. H.G. S.X.
0.55 70.6 At1g54490 841891 XRN4 (EXORIBONUCLEASE 4) Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing. O.I. H.G. S.X.
0.50 65.3 At5g06120 830499 Ran-binding protein, putative F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MOP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage