Co-expression analysis

Gene ID 1610744_at
Gene name hypothetical protein LOC100258016
Homology with ArabidopsisSimilar to At2g47170: ARF1A1C (HF=1e+0)
Module size 40 genes
NF 0.18
%ile 27.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.60.901610744_atCF415597hypothetical protein LOC100258016-1e+0At2g47170ARF1A1CO.I.H.G.S.X.
0.3548.50.951613588_atCA818655--6e-175Atcg00730-O.I.H.G.S.X.
0.3243.10.951622423_atCB342360similar to Bifunctional nitrilase/nitrile hydratase NIT4B-1e-13At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.3243.10.961614796_atCF609955hypothetical protein LOC100250729-4e-19At1g42960-O.I.H.G.S.X.
0.3141.30.921613635_atCF515464hypothetical protein LOC100242641-2e-1At1g64970G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)O.I.H.G.S.X.
0.3141.30.921614624_atCB914237hypothetical protein LOC100253628-1e+0At5g61110protein binding / zinc ion bindingO.I.H.G.S.X.
0.3039.40.961607413_atCF607927hypothetical protein LOC100264560-2e-25At3g52950CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinO.I.H.G.S.X.
0.2937.70.961615857_s_atBQ797394hypothetical protein LOC100267827-2e-53At1g01820PEX11C (PEROXIN 11C)O.I.H.G.S.X.
0.2632.00.951615820_atBQ796436hypothetical protein LOC100263593-1e-6At3g07270GTP cyclohydrolase IO.I.H.G.S.X.
0.2530.50.921610886_atBQ799094hypothetical protein LOC100251804-4e+0At5g11412nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.2428.70.961607332_atBQ797091hypothetical protein LOC100265577-6e-81At3g47060ftsh7 (FtsH protease 7)O.I.H.G.S.X.
0.2428.70.931606926_atCA812201hypothetical protein LOC100249085-1e-1At4g32915-O.I.H.G.S.X.
0.2428.70.971608792_s_atCF513346hypothetical protein LOC100250896-2e-138At5g50920CLPC1O.I.H.G.S.X.
0.2428.70.941621619_atCF405444hypothetical protein LOC100255167-3e-10At4g00490BAM2 (BETA-AMYLASE 2)O.I.H.G.S.X.
0.2327.50.931620564_atCA812876--1e-21At5g01820ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1)O.I.H.G.S.X.
0.2225.60.951616345_atCB920761hypothetical protein LOC100241649-1e-9At4g30810scpl29 (serine carboxypeptidase-like 29)O.I.H.G.S.X.
0.2124.00.971610039_s_atCA817529similar to NADH-plastoquinone oxidoreductase subunit K-0Atcg00480-O.I.H.G.S.X.
0.2124.00.951609481_atBQ799713--4e-45At3g53580diaminopimelate epimerase family proteinO.I.H.G.S.X.
0.2124.00.961612742_s_atCF372931hypothetical protein LOC100260825-4e-3At1g51600TIFY2AO.I.H.G.S.X.
0.2022.40.961613124_s_atCF200671.1similar to putative polyubiquitin (UBQ10)-5e-14At5g03240UBQ3 (POLYUBIQUITIN 3)O.I.H.G.S.X.
0.2022.40.961612831_s_atCF201533.1H+-pyrophosphatase-5e-9At1g15690AVP1O.I.H.G.S.X.
0.2022.40.941607584_atCB347280--4e+0At2g23148-O.I.H.G.S.X.
0.1920.90.931607659_atCB970210hypothetical protein LOC100255634-9e-25At1g55340unknown proteinO.I.H.G.S.X.
0.1819.40.941616688_s_atCB342776--0Atcg01050-O.I.H.G.S.X.
0.1819.40.921615077_atCA812382hypothetical protein LOC100264786-7e-6At1g03290unknown proteinO.I.H.G.S.X.
0.1718.20.961619846_atCB981983hypothetical protein LOC100247893-3e-11At2g39140SVR1 (SUPPRESSOR OF VARIEGATION 1)O.I.H.G.S.X.
0.1616.70.971611783_atBQ792690hypothetical protein LOC100262520-1e+0At2g43570chitinase, putativeO.I.H.G.S.X.
0.1515.60.951616189_atCF511570hypothetical protein LOC100260741-6e-18At1g75820CLV1 (CLAVATA 1)O.I.H.G.S.X.
0.1515.60.961615369_atCB918327hypothetical protein LOC100244035-1e+0At1g01800short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.1515.60.941609912_atCB975159hypothetical protein LOC100249144-5e+0At2g44820unknown proteinO.I.H.G.S.X.
0.1515.60.951606647_atCF207759hypothetical protein LOC100264779-6e-26At4g14780protein kinase, putativeO.I.H.G.S.X.
0.1414.40.951616449_atBM437669hypothetical protein LOC100247509-3e-1At2g36295unknown proteinO.I.H.G.S.X.
0.1313.30.971617022_atBQ794782hypothetical protein LOC100265005-6e+0At3g52300ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)O.I.H.G.S.X.
0.1313.30.961615266_atCF372926hypothetical protein LOC100246796-1e-14At5g24930zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.1212.10.931610454_s_atCF207579hypothetical protein LOC100245034-1e-47At5g62740band 7 family proteinO.I.H.G.S.X.
0.088.50.951607427_atCF213911hypothetical protein LOC100253432-1e-5At4g00700C2 domain-containing proteinO.I.H.G.S.X.
0.077.80.951622461_atCF207190hypothetical protein LOC100265048-3e-28At5g53570RabGAP/TBC domain-containing proteinO.I.H.G.S.X.
0.066.80.971614413_atCF211310hypothetical protein LOC100242392-9e-9At5g24810ABC1 family proteinO.I.H.G.S.X.
0.066.80.971612141_atCF515249hypothetical protein LOC100251659-1e-16At3g07560PEX13 (PEROXIN 13)O.I.H.G.S.X.
0.045.20.961621952_atBQ797666hypothetical protein LOC100259489-3e-54At5g20570RBX1 (RING-BOX 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.189.1GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
2.088.2GSM287885Green soft berry A22 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.088.2GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
1.987.2GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO
1.987.2GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
1.784.7GSM147724Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation53Link to GEO
1.784.7GSM322365genotype: Chardonnay - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
1.784.7GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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