Co-expression analysis

Gene ID	1610744_at
Gene name	hypothetical protein LOC100258016
Homology with Arabidopsis	Similar to At2g47170: ARF1A1C (HF=1e+0)
Module size	40 genes
NF	0.18
%ile	27.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	0.90	1610744_at	CF415597	hypothetical protein LOC100258016	-	1e+0	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.95	1613588_at	CA818655	-	-	6e-175	Atcg00730	-	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.95	1622423_at	CB342360	similar to Bifunctional nitrilase/nitrile hydratase NIT4B	-	1e-13	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.96	1614796_at	CF609955	hypothetical protein LOC100250729	-	4e-19	At1g42960	-	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.92	1613635_at	CF515464	hypothetical protein LOC100242641	-	2e-1	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.92	1614624_at	CB914237	hypothetical protein LOC100253628	-	1e+0	At5g61110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.96	1607413_at	CF607927	hypothetical protein LOC100264560	-	2e-25	At3g52950	CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.96	1615857_s_at	BQ797394	hypothetical protein LOC100267827	-	2e-53	At1g01820	PEX11C (PEROXIN 11C)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.95	1615820_at	BQ796436	hypothetical protein LOC100263593	-	1e-6	At3g07270	GTP cyclohydrolase I	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.92	1610886_at	BQ799094	hypothetical protein LOC100251804	-	4e+0	At5g11412	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.96	1607332_at	BQ797091	hypothetical protein LOC100265577	-	6e-81	At3g47060	ftsh7 (FtsH protease 7)	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.93	1606926_at	CA812201	hypothetical protein LOC100249085	-	1e-1	At4g32915	-	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.97	1608792_s_at	CF513346	hypothetical protein LOC100250896	-	2e-138	At5g50920	CLPC1	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.94	1621619_at	CF405444	hypothetical protein LOC100255167	-	3e-10	At4g00490	BAM2 (BETA-AMYLASE 2)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.93	1620564_at	CA812876	-	-	1e-21	At5g01820	ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.95	1616345_at	CB920761	hypothetical protein LOC100241649	-	1e-9	At4g30810	scpl29 (serine carboxypeptidase-like 29)	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.97	1610039_s_at	CA817529	similar to NADH-plastoquinone oxidoreductase subunit K	-	0	Atcg00480	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.95	1609481_at	BQ799713	-	-	4e-45	At3g53580	diaminopimelate epimerase family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.96	1612742_s_at	CF372931	hypothetical protein LOC100260825	-	4e-3	At1g51600	TIFY2A	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.96	1613124_s_at	CF200671.1	similar to putative polyubiquitin (UBQ10)	-	5e-14	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.96	1612831_s_at	CF201533.1	H+-pyrophosphatase	-	5e-9	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.94	1607584_at	CB347280	-	-	4e+0	At2g23148	-	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.93	1607659_at	CB970210	hypothetical protein LOC100255634	-	9e-25	At1g55340	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.94	1616688_s_at	CB342776	-	-	0	Atcg01050	-	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.92	1615077_at	CA812382	hypothetical protein LOC100264786	-	7e-6	At1g03290	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1619846_at	CB981983	hypothetical protein LOC100247893	-	3e-11	At2g39140	SVR1 (SUPPRESSOR OF VARIEGATION 1)	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.97	1611783_at	BQ792690	hypothetical protein LOC100262520	-	1e+0	At2g43570	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.95	1616189_at	CF511570	hypothetical protein LOC100260741	-	6e-18	At1g75820	CLV1 (CLAVATA 1)	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.96	1615369_at	CB918327	hypothetical protein LOC100244035	-	1e+0	At1g01800	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.94	1609912_at	CB975159	hypothetical protein LOC100249144	-	5e+0	At2g44820	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.95	1606647_at	CF207759	hypothetical protein LOC100264779	-	6e-26	At4g14780	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.95	1616449_at	BM437669	hypothetical protein LOC100247509	-	3e-1	At2g36295	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1617022_at	BQ794782	hypothetical protein LOC100265005	-	6e+0	At3g52300	ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.96	1615266_at	CF372926	hypothetical protein LOC100246796	-	1e-14	At5g24930	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.93	1610454_s_at	CF207579	hypothetical protein LOC100245034	-	1e-47	At5g62740	band 7 family protein	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.95	1607427_at	CF213911	hypothetical protein LOC100253432	-	1e-5	At4g00700	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.95	1622461_at	CF207190	hypothetical protein LOC100265048	-	3e-28	At5g53570	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.97	1614413_at	CF211310	hypothetical protein LOC100242392	-	9e-9	At5g24810	ABC1 family protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.97	1612141_at	CF515249	hypothetical protein LOC100251659	-	1e-16	At3g07560	PEX13 (PEROXIN 13)	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.96	1621952_at	BQ797666	hypothetical protein LOC100259489	-	3e-54	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.1	89.1	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.0	88.2	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.9	87.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.9	87.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
1.7	84.7	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
1.7	84.7	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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