Co-expression analysis

Gene ID	1610689_at
Gene name	hypothetical LOC100252368
Homology with Arabidopsis	Similar to At1g63055: unknown protein (HF=8e-1)
Module size	24 genes
NF	0.54
%ile	80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.8	0.95	1610689_at	CB969755	hypothetical LOC100252368	-	8e-1	At1g63055	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	91.5	0.97	1607123_at	CF204106.1	-	-	2e-9	At1g11870	SRS (SERYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.97	1610065_at	CF373155	hypothetical protein LOC100260744	-	3e-1	At4g09775	-	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.96	1614257_at	CB339549	hypothetical protein LOC100250970	-	4e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.62	83.3	0.97	1609523_at	CF415830	hypothetical protein LOC100250310	-	7e-2	At2g28020	-	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.95	1617675_at	CF373767	hypothetical protein LOC100245692	-	3e-13	At5g24020	MIND	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.96	1614015_at	CB004069	-	-	1e+0	At5g53220	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.96	1612453_at	CF209808	hypothetical protein LOC100248413	-	3e-46	At1g11870	SRS (SERYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.97	1610900_at	CF516848	hypothetical LOC100244581	-	2e-1	At1g78480	prenyltransferase/squalene oxidase repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.96	1620148_at	CF210107	hypothetical protein LOC100252338	-	3e-17	At3g58830	haloacid dehalogenase (HAD) superfamily protein	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.97	1607315_at	CB918842	-	-	4e+0	At5g41600	BTI3 (VIRB2-INTERACTING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.96	1612940_at	CF414199	hypothetical protein LOC100244154	-	8e-9	At2g38025	-	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.96	1616874_at	CF415286	-	-	2e-18	At5g58250	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1612460_s_at	CF207746	hypothetical protein LOC100245544	-	4e-20	At2g38270	CXIP2 (CAX-INTERACTING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.96	1622017_at	BQ106735	hypothetical protein LOC100241648	-	4e-34	At1g74910	ADP-glucose pyrophosphorylase family protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.98	1607285_s_at	CD013720	hypothetical protein LOC100262997	-	3e-54	At5g52520	OVA6 (OVULE ABORTION 6)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.96	1618539_at	CF513048	hypothetical protein LOC100267633	-	1e-2	At2g41950	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.97	1614765_at	CD003886	hypothetical protein LOC100242287	-	1e-78	At3g59870	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.95	1619663_at	CF212160	hypothetical protein LOC100243552	-	4e+0	At4g10920	KELP	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1608602_at	CF511585	hypothetical protein LOC100264906	-	4e-2	At3g09210	PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.96	1611482_at	CB970073	hypothetical LOC100250857 /// hypothetical protein LOC100262976	-	2e-2	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.97	1611293_at	CF414363	hypothetical protein LOC100267754	-	3e-19	At2g43030	ribosomal protein L3 family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1616672_at	CF516136	hypothetical protein LOC100252527	-	2e-2	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1607640_at	CF215061	hypothetical protein LOC100249595	-	1e-19	At1g65260	PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.0	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.8	86.0	GSM436384	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
1.7	84.7	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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