Co-expression analysis

Gene ID	1610645_at
Gene name	hypothetical protein LOC100251896
Homology with Arabidopsis	Similar to At1g61620: phosphoinositide binding (HF=2e-13)
Module size	6 genes
NF	0.40
%ile	58.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	0.98	1610645_at	CD004549	hypothetical protein LOC100251896	-	2e-13	At1g61620	phosphoinositide binding	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1619228_at	BQ794778	hypothetical protein LOC100248533	-	8e-5	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1609250_at	Y18471.1	SINA1p	-	2e-60	At3g61790	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1615460_at	CF405945	hypothetical protein LOC100249750	-	2e-91	At1g06700	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1620076_s_at	CA809762	hypothetical protein LOC100254960	-	6e-15	At1g15270	-	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1608021_at	BQ796920	hypothetical protein LOC100250690	-	6e-1	At3g46620	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.8	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.1	89.1	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.1	89.1	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.1	89.1	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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