Co-expression analysis

Gene ID	1610600_at
Gene name	hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829
Homology with Arabidopsis	Similar to At3g08580: AAC1 (ADP/ATP CARRIER 1) (HF=3e-1)
Module size	6 genes
NF	0.60
%ile	86.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.92	1610600_at	CA813949	hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829	-	3e-1	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.93	1613603_at	CF211665	hypothetical protein LOC100248706	-	1e-7	At1g47670	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.89	1613837_at	CF605759	hypothetical protein LOC100248706	-	4e-4	At1g47670	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.93	1617483_at	CD799044	hypothetical protein LOC100267019	-	1e+0	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.93	1609744_at	CF203760.1	hypothetical protein LOC100240811 /// hypothetical protein LOC100263073	-	2e+0	At3g42630	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.92	1609397_at	CF512090	hypothetical protein LOC100248717	-	1e-35	At5g64300	ATGCH	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.9	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
2.5	91.9	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
2.2	89.9	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
2.0	88.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.0	88.2	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.0	88.2	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
1.9	87.2	GSM147714	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	43

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.20.1.A1_at, orthologous to the query gene, 1610600_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	96.8	ZmAffx.20.1.A1_at	At3g08580	-	-	3e+0	At4g02550	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	Zm.18405.1.A1_at	At3g08580	hypothetical protein LOC100193248	-	3e+0	At5g01881	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	Zm.2076.2.A1_at	At3g08580	hypothetical protein LOC100194265	-	2e-3	At3g04230	40S ribosomal protein S16 (RPS16B)	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.5919.1.S1_at	At3g08580	-	-	4e-2	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.58	75.1	Zm.5101.1.S1_at	At3g08580	hypothetical protein LOC100193724	-	1e-3	At3g01300	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.18004.1.A1_at	At3g08580	dihydroflavonol-4-reductase	-	1e-1	At4g08800	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.12381.2.S1_x_at	At3g08580	-	-	2e-1	At1g11270	F-box family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.18281.1.S1_at	At3g08580	hypothetical protein LOC100277869	-	5e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.11621.2.A1_x_at	At3g08580	diphthamide biosynthesis protein 3	-	2e-2	At2g15910	CSL zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	Zm.10135.1.A1_at	At3g08580	-	-	1e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.7644.2.S1_at	At3g08580	-	-	4e+0	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.15975.1.A1_at	At3g08580	-	-	5e-2	At4g17560	ribosomal protein L19 family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.5286.1.A1_at	At3g08580	ubiquitin fusion degradation protein 1	-	2e-17	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.19120.1.A1_at	At3g08580	hypothetical protein LOC100272621	-	4e-7	At3g20810	transcription factor jumonji (jmjC) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.4271.4.A1_at	At3g08580	hypothetical protein LOC100273684	-	6e-5	At1g02690	IMPA-6 (IMPORTIN ALPHA ISOFORM 6)	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.13256.1.A1_at	At3g08580	RNA polymerase sigma factor 2	-	3e-6	At1g64860	SIGA (SIGMA FACTOR A)	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.10287.1.S1_at	At3g08580	-	-	1e+0	At2g45250	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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