CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1610600_at

Gene name hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829
Homology with Arabidopsis Similar to At3g08580: AAC1 (ADP/ATP CARRIER 1) (HF=3e-1)

Module size 6 genes

NF 0.60

%ile 86.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.92 1610600_at CA813949 hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829 - 3e-1 At3g08580 AAC1 (ADP/ATP CARRIER 1) O.I. H.G. S.X.
0.73 90.8 0.93 1613603_at CF211665 hypothetical protein LOC100248706 - 1e-7 At1g47670 amino acid transporter family protein O.I. H.G. S.X.
0.61 83.2 0.89 1613837_at CF605759 hypothetical protein LOC100248706 - 4e-4 At1g47670 amino acid transporter family protein O.I. H.G. S.X.
0.50 72.7 0.93 1617483_at CD799044 hypothetical protein LOC100267019 - 1e+0 At2g04170 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.
0.46 66.5 0.93 1609744_at CF203760.1 hypothetical protein LOC100240811 /// hypothetical protein LOC100263073 - 2e+0 At3g42630 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.23 27.5 0.92 1609397_at CF512090 hypothetical protein LOC100248717 - 1e-35 At5g64300 ATGCH O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 97.9 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.5 91.9 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
2.5 91.9 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
2.2 89.9 GSM147686 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 15
2.0 88.2 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
2.0 88.2 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
2.0 88.2 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
1.9 87.2 GSM147714 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 43

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.64012.1.A1_at, orthologous to the query gene, 1610600_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.79 91.3 TaAffx.64012.1.A1_at At3g08580 - - 1e+1 At5g23600 tRNA 2'phosphotransferase, putative O.I. H.G. S.X.
0.69 86.9 Ta.9925.2.S1_x_at At3g08580 - - 7e-1 At5g42232 - O.I. H.G. S.X.
0.67 86.3 Ta.9925.2.S1_at At3g08580 - - 7e-1 At5g42232 - O.I. H.G. S.X.
0.67 86.3 TaAffx.71607.1.A1_at At3g08580 - - 2e+1 At3g14670 unknown protein O.I. H.G. S.X.
0.62 82.3 Ta.12753.1.S1_at At3g08580 - - 5e+0 At1g18130 tRNA synthetase-related / tRNA ligase-related O.I. H.G. S.X.
0.58 79.2 Ta.6416.1.S1_at At3g08580 - - 5e-15 At2g38110 GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6) O.I. H.G. S.X.
0.56 78.6 Ta.28543.1.A1_at At3g08580 - - 5e+0 At5g56600 PRF3 (PROFILIN 3) O.I. H.G. S.X.
0.46 66.8 Ta.9925.1.A1_a_at At3g08580 - - 1e+1 At5g14920 gibberellin-regulated family protein O.I. H.G. S.X.
0.41 59.6 Ta.9603.1.S1_s_at At3g08580 - - 1e+1 At4g14272 - O.I. H.G. S.X.
0.41 59.6 Ta.3199.1.S1_a_at At3g08580 - - 5e+0 At5g21940 unknown protein O.I. H.G. S.X.
0.40 58.4 Ta.21957.1.S1_at At3g08580 - - 6e+0 At2g21185 unknown protein O.I. H.G. S.X.
0.36 51.9 Ta.14062.1.S1_a_at At3g08580 - - 1e-1 At1g67840 CSK (CHLOROPLAST SENSOR KINASE) O.I. H.G. S.X.
0.36 51.9 Ta.14062.2.S1_a_at At3g08580 - - 1e+0 At2g30615 - O.I. H.G. S.X.
0.29 39.2 Ta.9925.1.A1_x_at At3g08580 - - 1e+1 At5g14920 gibberellin-regulated family protein O.I. H.G. S.X.
0.28 39.2 Ta.28003.1.S1_x_at At3g08580 - - 2e-7 At1g01300 aspartyl protease family protein O.I. H.G. S.X.
0.28 39.2 Ta.21393.1.A1_s_at At3g08580 - - 5e+0 At2g07774 unknown protein O.I. H.G. S.X.
0.21 25.5 Ta.4062.1.S1_x_at At3g08580 - - 2e-1 At4g38420 sks9 (SKU5 Similar 9) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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