Co-expression analysis

Gene ID	1610600_at
Gene name	hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829
Homology with Arabidopsis	Similar to At3g08580: AAC1 (ADP/ATP CARRIER 1) (HF=3e-1)
Module size	6 genes
NF	0.60
%ile	86.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.92	1610600_at	CA813949	hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829	-	3e-1	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.93	1613603_at	CF211665	hypothetical protein LOC100248706	-	1e-7	At1g47670	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.89	1613837_at	CF605759	hypothetical protein LOC100248706	-	4e-4	At1g47670	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.93	1617483_at	CD799044	hypothetical protein LOC100267019	-	1e+0	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.93	1609744_at	CF203760.1	hypothetical protein LOC100240811 /// hypothetical protein LOC100263073	-	2e+0	At3g42630	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.92	1609397_at	CF512090	hypothetical protein LOC100248717	-	1e-35	At5g64300	ATGCH	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.9	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
2.5	91.9	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
2.2	89.9	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
2.0	88.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.0	88.2	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.0	88.2	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
1.9	87.2	GSM147714	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	43

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.61275.1.A1_at, orthologous to the query gene, 1610600_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.61275.1.A1_at	At3g08580	-	-	6e-1	At4g09270	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.34333.1.S1_at	At3g08580	-	-	3e+0	At4g01671	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.205670.1.S1_at	At3g08580	hypothetical protein	-	2e-19	At1g06560	NOL1/NOP2/sun family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.210899.1.S1_at	At3g08580	hypothetical protein	-	1e-3	At1g09040	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.22559.1.A1_a_at	At3g08580	hypothetical protein	-	2e+1	At5g60860	AtRABA1f (Arabidopsis Rab GTPase homolog A1f)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.15237.2.S1_a_at	At3g08580	hypothetical protein	-	6e-16	At1g55490	CPN60B (CHAPERONIN 60 BETA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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