Co-expression analysis

Gene ID 1610600_at
Gene name hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829
Homology with ArabidopsisSimilar to At3g08580: AAC1 (ADP/ATP CARRIER 1) (HF=3e-1)
Module size 6 genes
NF 0.60
%ile 86.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.921610600_atCA813949hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829-3e-1At3g08580AAC1 (ADP/ATP CARRIER 1)O.I.H.G.S.X.
0.7390.80.931613603_atCF211665hypothetical protein LOC100248706-1e-7At1g47670amino acid transporter family proteinO.I.H.G.S.X.
0.6183.20.891613837_atCF605759hypothetical protein LOC100248706-4e-4At1g47670amino acid transporter family proteinO.I.H.G.S.X.
0.5072.70.931617483_atCD799044hypothetical protein LOC100267019-1e+0At2g04170meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.4666.50.931609744_atCF203760.1hypothetical protein LOC100240811 /// hypothetical protein LOC100263073-2e+0At3g42630pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.2327.50.921609397_atCF512090hypothetical protein LOC100248717-1e-35At5g64300ATGCHO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.997.9GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.591.9GSM147687Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation16Link to GEO
2.591.9GSM436414V. riparia (VR, PI588259) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM147693Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation22Link to GEO
2.289.9GSM147686Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation15Link to GEO
2.088.2GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO
2.088.2GSM147675Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation4Link to GEO
2.088.2GSM287866Green hard berry B21 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.088.2GSM147726Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation55Link to GEO
1.987.2GSM147714Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation43Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os07g0622900, orthologous to the query gene, 1610600_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7189.6Os07g0622900At3g08580-Conserved hypothetical protein2e+0At4g02430pre-mRNA splicing factor, putative / SR1 protein, putativeO.I.H.G.S.X.
0.4458.1Os02g0475300At3g08580-Membrane attack complexcomponent/perforin/complement C9 family protein5e+0At5g08590SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1)O.I.H.G.S.X.
0.3644.0Os02g0682500At3g08580-TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein)2e-1At5g52060ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1)O.I.H.G.S.X.
0.3134.5Os03g0639600At3g08580-Zinc-finger protein Lsd14e-5At4g20380zinc finger protein (LSD1)O.I.H.G.S.X.
0.2219.4Os03g0567600At3g08580-Protein of unknown function DUF563 family protein1e-3At5g58000-O.I.H.G.S.X.
0.1611.3Os06g0102700At3g08580-Arm repeat-containing protein1e-6At3g46510PUB13 (PLANT U-BOX 13)O.I.H.G.S.X.
0.1510.3Os08g0107100At3g08580-Conserved hypothetical protein1e-2At1g79780-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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