Co-expression analysis

Gene ID	1610600_at
Gene name	hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829
Homology with Arabidopsis	Similar to At3g08580: AAC1 (ADP/ATP CARRIER 1) (HF=3e-1)
Module size	6 genes
NF	0.60
%ile	86.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.92	1610600_at	CA813949	hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829	-	3e-1	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.93	1613603_at	CF211665	hypothetical protein LOC100248706	-	1e-7	At1g47670	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.89	1613837_at	CF605759	hypothetical protein LOC100248706	-	4e-4	At1g47670	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.93	1617483_at	CD799044	hypothetical protein LOC100267019	-	1e+0	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.93	1609744_at	CF203760.1	hypothetical protein LOC100240811 /// hypothetical protein LOC100263073	-	2e+0	At3g42630	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.92	1609397_at	CF512090	hypothetical protein LOC100248717	-	1e-35	At5g64300	ATGCH	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.9	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
2.5	91.9	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
2.2	89.9	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
2.0	88.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.0	88.2	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.0	88.2	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
1.9	87.2	GSM147714	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	43

Inter-species module comparison

A co-expression module including the barley gene, rbags16o16_s_at, orthologous to the query gene, 1610600_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	95.4	rbags16o16_s_at	At3g08580	-	-	8e+0	At5g50270	F-box family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig21245_at	At3g08580	-	-	2e+0	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig16950_at	At3g08580	-	-	5e+0	At5g09540	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	rbags1i23_s_at	At3g08580	-	-	2e-16	At1g67430	60S ribosomal protein L17 (RPL17B)	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig3178_s_at	At3g08580	-	-	5e-35	At2g27020	PAG1	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig15562_at	At3g08580	-	-	6e-6	At3g12270	PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.34	43.6	HA27E10r_x_at	At3g08580	-	-	3e-5	At2g39390	60S ribosomal protein L35 (RPL35B)	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig18503_at	At3g08580	-	-	1e-1	At4g01995	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	EBpi01_SQ001_K06_s_at	At3g08580	-	-	3e-12	At4g15000	60S ribosomal protein L27 (RPL27C)	O.I.	H.G.	S.X.	Please select
0.32	40.3	HU09E20u_s_at	At3g08580	-	-	3e+0	At3g55820	-	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig4938_s_at	At3g08580	-	-	8e-47	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig8614_at	At3g08580	-	-	1e-14	At2g18750	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig12493_at	At3g08580	-	-	5e-8	At1g54115	CCX4 (CATION CALCIUM EXCHANGER 4)	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig10079_at	At3g08580	-	-	3e-18	At3g53580	diaminopimelate epimerase family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	HY09G23u_s_at	At3g08580	-	-	8e-1	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	O.I.	H.G.	S.X.	Please select
0.30	37.0	HY10F15u_s_at	At3g08580	-	-	7e+0	At3g49550	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	HS08B03u_s_at	At3g08580	-	-	3e-22	At5g58420	40S ribosomal protein S4 (RPS4D)	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig23027_at	At3g08580	-	-	1e-1	At3g26790	FUS3 (FUSCA 3)	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig10232_at	At3g08580	-	-	1e-1	At5g65840	-	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig5619_at	At3g08580	-	-	3e-3	At1g06690	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig23141_at	At3g08580	-	-	1e+0	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig19196_at	At3g08580	-	-	1e+0	At3g01230	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig9332_at	At3g08580	-	-	6e+0	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig10520_s_at	At3g08580	-	-	3e-1	At4g39990	RABA4B (RAB GTPASE HOMOLOG A4B)	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig10818_at	At3g08580	-	-	1e-2	At1g47970	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig6545_at	At3g08580	-	-	1e-2	At1g14250	nucleoside phosphatase family protein / GDA1/CD39 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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