CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1610600_at

Gene name hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829
Homology with Arabidopsis Similar to At3g08580: AAC1 (ADP/ATP CARRIER 1) (HF=3e-1)

Module size 6 genes

NF 0.60

%ile 86.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.92 1610600_at CA813949 hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829 - 3e-1 At3g08580 AAC1 (ADP/ATP CARRIER 1) O.I. H.G. S.X.
0.73 90.8 0.93 1613603_at CF211665 hypothetical protein LOC100248706 - 1e-7 At1g47670 amino acid transporter family protein O.I. H.G. S.X.
0.61 83.2 0.89 1613837_at CF605759 hypothetical protein LOC100248706 - 4e-4 At1g47670 amino acid transporter family protein O.I. H.G. S.X.
0.50 72.7 0.93 1617483_at CD799044 hypothetical protein LOC100267019 - 1e+0 At2g04170 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.
0.46 66.5 0.93 1609744_at CF203760.1 hypothetical protein LOC100240811 /// hypothetical protein LOC100263073 - 2e+0 At3g42630 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.23 27.5 0.92 1609397_at CF512090 hypothetical protein LOC100248717 - 1e-35 At5g64300 ATGCH O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 97.9 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.5 91.9 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
2.5 91.9 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
2.2 89.9 GSM147686 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 15
2.0 88.2 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
2.0 88.2 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
2.0 88.2 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
1.9 87.2 GSM147714 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 43

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g08580, orthologous to the query gene, 1610600_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.27 26.2 At3g08580 820005 AAC1 (ADP/ATP CARRIER 1) mitochondrial ADP/ATP carrier O.I. H.G. S.X.
0.96 97.3 At1g49140 841337 NADH-ubiquinone oxidoreductase-related F:unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;FPM O.I. H.G. S.X.
0.90 95.1 At5g47570 834807 unknown protein F:molecular_function unknown;P:biological_process unknown;C:respiratory chain complex I;PO O.I. H.G. S.X.
0.73 85.5 At4g34700 829622 complex 1 family protein / LVR family protein F:catalytic activity;P:photorespiration;C:mitochondrial membrane, plasma membrane, respiratory chain complex I;MFPO O.I. H.G. S.X.
0.71 84.2 At4g37830 829939 cytochrome c oxidase-related F:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;MPO O.I. H.G. S.X.
0.63 78.1 At3g08610 820008 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;P O.I. H.G. S.X.
0.61 76.7 At1g26550 839195 peptidyl-prolyl cis-trans isomerase PPIC-type family protein F:isomerase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA O.I. H.G. S.X.
0.61 76.7 At2g20820 816613 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.59 74.7 At2g33040 817866 ATP synthase gamma chain, mitochondrial (ATPC) F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:in 7 components;OBMFPA O.I. H.G. S.X.
0.59 74.7 At4g29480 829069 mitochondrial ATP synthase g subunit family protein F:hydrogen ion transmembrane transporter activity;P:proton transport, ATP synthesis coupled proton transport;C:mitochondrion;PO O.I. H.G. S.X.
0.44 57.2 At5g52840 835361 NADH-ubiquinone oxidoreductase-related F:oxidoreductase activity, acting on NADH or NADPH;P:photorespiration;C:mitochondrion, mitochondrial membrane, chloroplast, respiratory chain complex I, membrane;MFPO O.I. H.G. S.X.
0.42 53.9 At4g32470 829382 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, plasma membrane, plastid, mitochondrial respiratory chain complex III, membrane;MPFO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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