CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1610567_at

Gene name
Homology with Arabidopsis Similar to At3g48185: unknown protein (HF=3e-5)

Module size 13 genes

NF 0.47

%ile 70.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 83.2 0.96 1610567_at CF212759 - - 3e-5 At3g48185 unknown protein O.I. H.G. S.X.
0.61 83.2 0.96 1616521_at AF196485.1 beta-tubulin - 9e-56 At5g62700 TUB3 O.I. H.G. S.X.
0.59 80.6 0.97 1613351_at CB972999 hypothetical protein LOC100252023 - 2e-1 At5g12970 C2 domain-containing protein O.I. H.G. S.X.
0.57 79.8 0.96 1608586_at CF514688 hypothetical protein LOC100241814 - 4e-18 At4g21960 PRXR1 O.I. H.G. S.X.
0.54 75.7 0.98 1614917_at CF372079 hypothetical protein LOC100267340 - 4e+0 At5g60660 PIP2 O.I. H.G. S.X.
0.48 68.8 0.97 1609302_at CB979609 similar to somatic embryogenesis receptor kinase - 7e-14 At1g34210 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) O.I. H.G. S.X.
0.46 66.5 0.96 1613373_at BM437091 hypothetical protein LOC100245626 - 5e-7 At3g25500 AFH1 (FORMIN HOMOLOGY 1) O.I. H.G. S.X.
0.41 58.7 0.96 1617440_at CF373136 hypothetical protein LOC100247017 - 8e-2 At5g61470 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.40 57.7 0.97 1608829_at CD802477 hypothetical protein LOC100258592 - 9e-24 At4g03415 catalytic/ protein serine/threonine phosphatase O.I. H.G. S.X.
0.39 54.9 0.97 1611516_at CB008162 hypothetical protein LOC100262734 - 2e-5 At3g28690 protein kinase, putative O.I. H.G. S.X.
0.33 45.7 0.98 1622185_at CF209948 - - 3e-2 At1g78915 binding O.I. H.G. S.X.
0.33 45.7 0.97 1607678_at CB972163 hypothetical protein LOC100254822 - 3e-25 At2g34710 PHB (PHABULOSA) O.I. H.G. S.X.
0.24 28.7 0.98 1611382_at CF212352 hypothetical protein LOC100264955 - 2e-6 At3g53850 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.0 98.0 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.5 95.7 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.8 93.4 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.2 89.9 GSM287891 Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287887 Green soft berry C23 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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