Co-expression analysis

Gene ID	1610556_at
Gene name	hypothetical protein LOC100250209
Homology with Arabidopsis	Similar to At5g23950: C2 domain-containing protein (HF=4e+0)
Module size	19 genes
NF	0.37
%ile	54.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	95.4	0.98	1610556_at	CF415554	hypothetical protein LOC100250209	-	4e+0	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1619013_at	CF514808	hypothetical protein LOC100242671	-	3e-32	At1g03260	-	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1618759_at	CB348270	hypothetical protein LOC100256813	-	1e+0	At1g76010	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1615516_at	CF511735	hypothetical protein LOC100255660	-	5e+0	At4g11760	LCR17 (Low-molecular-weight cysteine-rich 17)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.98	1619715_at	CF207152	hypothetical protein LOC100243011	-	5e-39	At1g30470	SIT4 phosphatase-associated family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.98	1608302_at	BQ792683	hypothetical protein LOC100253708	-	4e-3	At4g26750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.98	1610189_at	CF211002	hypothetical protein LOC100257691	-	4e+0	At5g47830	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.99	1615804_at	CF403733	-	-	4e-2	At5g65910	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	1614009_at	BQ797920	hypothetical protein LOC100242045	-	4e-19	At1g14000	VIK (VH1-INTERACTING KINASE)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	1616468_at	BQ797683	hypothetical protein LOC100246828	-	5e-66	At1g63830	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1614555_at	CF518554	hypothetical protein LOC100254478	-	2e-13	At5g45300	BMY2 (BETA-AMYLASE 2)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.99	1611632_at	CB346860	similar to SUS2 (ABNORMAL SUSPENSOR 2)	-	2e-87	At4g38780	splicing factor, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.98	1614599_at	CF513204	hypothetical protein LOC100248579	-	1e-25	At4g01810	protein transport protein-related	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.98	1609035_at	BQ796729	hypothetical protein LOC100251284	-	2e-12	At2g40830	RHC1A	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1613731_at	CF513972	hypothetical protein LOC100248748	-	2e-5	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1612360_at	CB970071	hypothetical protein LOC100244110	-	2e-152	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.98	1614602_at	CB004149	hypothetical protein LOC100244335	-	1e-32	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.98	AFFX-Vvi-actin-3_c7_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.98	1618690_at	CF207597	hypothetical protein LOC100259195	-	3e-16	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	90.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.2	89.9	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.1	89.1	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.1	89.1	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.1	89.1	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.0	88.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.0	88.2	GSM436386	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
1.9	87.2	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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