Co-expression analysis

Gene ID 1610552_at
Gene name
Homology with ArabidopsisSimilar to At5g63380: 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein (HF=5e-10)
Module size 8 genes
NF 0.07
%ile 14.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6484.70.931610552_atCF201894.1--5e-10At5g633804-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinO.I.H.G.S.X.
0.3650.70.951608633_s_atCA814450hypothetical protein LOC100253479-1e-26At5g62740band 7 family proteinO.I.H.G.S.X.
0.3345.70.951621554_s_atCF511998similar to Os03g0670700-4e-6At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.3141.30.961616828_s_atCD799685similar to Os03g0670700-1e+0At4g38680GRP2 (GLYCINE RICH PROTEIN 2)O.I.H.G.S.X.
0.077.80.951616273_atCB004363hypothetical protein LOC100252917-6e+0At5g49410unknown proteinO.I.H.G.S.X.
0.077.80.941613552_atCB916656hypothetical LOC100243703-1e-3At5g58700phosphoinositide-specific phospholipase C family proteinO.I.H.G.S.X.
0.045.20.941618421_atCF604028hypothetical protein LOC100252493-6e-6At3g57560aspartate/glutamate/uridylate kinase family proteinO.I.H.G.S.X.
0.023.20.941619104_s_atCD004014hypothetical protein LOC100242520-1e-41At3g23940dehydratase familyO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.297.1GSM287877Green hard berry B12 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.796.2GSM287888Green soft berry C24 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.294.9GSM287885Green soft berry A22 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.194.6GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.094.2GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.893.4GSM287896Pink soft berry C27 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.893.4GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO
2.893.4GSM287879Green hard berry C19 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM287894Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.692.5GSM287895Pink soft berry B13 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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