Co-expression analysis

Gene ID	1610514_at
Gene name	ripening induced protein
Homology with Arabidopsis	Similar to At4g33750: - (HF=2e-1)
Module size	6 genes
NF	0.52
%ile	77.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.94	1610514_at	AF176655.1	ripening induced protein	-	2e-1	At4g33750	-	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.94	1613388_at	CF568873	-	-	1e-9	At4g25370	Clp amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.94	1607083_at	CB002933	-	-	4e+0	At3g17950	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.94	1614270_at	CD010750	-	-	3e-20	At3g07670	SET domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.95	1622413_at	CD714494	-	-	3e-1	At4g39070	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.94	1618102_at	CF415084	-	-	7e-37	At2g18710	SCY1 (SecY Homolog 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.2	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.6	96.0	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
2.0	88.2	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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