Co-expression analysis

Gene ID	1610478_at
Gene name	hypothetical protein LOC100247635
Homology with Arabidopsis	Similar to At4g23885: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.27
%ile	38.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.37	51.7	0.96	1610478_at	CD717598	hypothetical protein LOC100247635	-	1e+0	At4g23885	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.96	1612967_at	CB347472	hypothetical protein LOC100251827	-	5e-23	At1g74750	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.96	1613746_at	CD798895	hypothetical protein LOC100267664	-	1e+0	At1g07640	OBP2	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1619722_at	CF213692	hypothetical protein LOC100246022	-	7e-26	At5g19010	MPK16	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1622461_at	CF207190	hypothetical protein LOC100265048	-	3e-28	At5g53570	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.96	1607144_at	CB971726	similar to plasma membrane H+ ATPase	-	1e-175	At3g47950	AHA4	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	97.5	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.2	97.1	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.5	91.9	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
2.5	91.9	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.4	91.3	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.3	90.7	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.2	89.9	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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