Co-expression analysis

Gene ID	1610434_at
Gene name	hypothetical protein LOC100244562
Homology with Arabidopsis	Similar to At5g24090: acidic endochitinase (CHIB1) (HF=1e+0)
Module size	14 genes
NF	0.49
%ile	73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	0.98	1610434_at	CF404432	hypothetical protein LOC100244562	-	1e+0	At5g24090	acidic endochitinase (CHIB1)	O.I.	H.G.	S.X.	Please select
0.65	85.0	0.99	1618813_at	CB970187	hypothetical protein LOC100263840	-	2e+0	At1g69828	-	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.98	1609801_at	CF404736	hypothetical protein LOC100258598	-	6e-47	At3g21650	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.99	1610526_at	CF212320	hypothetical protein LOC100243575	-	2e-1	At2g44580	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.99	1614602_at	CB004149	hypothetical protein LOC100244335	-	1e-32	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1618348_at	CF373264	hypothetical protein LOC100265921	-	1e-47	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1614110_s_at	CD801616	cullin 1	-	2e-19	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.99	1613769_at	CB970019	hypothetical protein LOC100265267	-	4e-48	At1g51690	ATB ALPHA	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.99	1607119_at	CD799254	hypothetical protein LOC100247980	-	6e-71	At1g78920	AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.99	1611870_at	CF414975	hypothetical protein LOC100247177	-	8e-152	At5g09740	HAM2 (histone acetyltransferase of the MYST family 2)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.99	1615804_at	CF403733	-	-	4e-2	At5g65910	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.99	1613582_at	CF204478.1	hypothetical protein LOC100261825	-	6e-12	At5g14170	CHC1	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.99	1617845_at	CD800649	hypothetical protein LOC100263968	-	4e-35	At2g38630	-	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.99	1614365_at	CF210448	hypothetical protein LOC100266203	-	2e-36	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	97.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
3.3	95.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.3	90.7	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.1	89.1	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.0	88.2	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
2.0	88.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.9	87.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.9	87.2	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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