Co-expression analysis

Gene ID 1610384_s_at
Gene name hypothetical protein LOC100252560
Homology with ArabidopsisSimilar to At1g23140: C2 domain-containing protein (HF=3e-5)
Module size 6 genes
NF 0.12
%ile 19.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4666.50.951610384_s_atCB340178hypothetical protein LOC100252560-3e-5At1g23140C2 domain-containing proteinO.I.H.G.S.X.
0.5072.70.951615761_atBQ792758hypothetical protein LOC100246735-7e-1At1g07350transformer serine/arginine-rich ribonucleoprotein, putativeO.I.H.G.S.X.
0.4464.10.951619029_atCF403690hypothetical protein LOC100243434-1e-14At4g34000ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3)O.I.H.G.S.X.
0.099.40.961614986_atCF372413hypothetical protein LOC100261262-5e-15At5g45410unknown proteinO.I.H.G.S.X.
0.066.80.951618138_atCF518548hypothetical protein LOC100241669-6e+0At5g50345-O.I.H.G.S.X.
0.066.80.951606608_atCF210624hypothetical protein LOC100255266-2e-12At2g46610arginine/serine-rich splicing factor, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.395.2GSM436387Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.294.9GSM322362genotype: Chardonnay - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.294.9GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.094.2GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
3.094.2GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.094.2GSM299458D_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.793.0GSM147716Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation45Link to GEO
2.591.9GSM287885Green soft berry A22 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.591.9GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO
2.591.9GSM287887Green soft berry C23 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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