Co-expression analysis

Gene ID	1610370_s_at
Gene name	hypothetical protein LOC100243953
Homology with Arabidopsis	Similar to At5g22430: unknown protein (HF=1e+0)
Module size	8 genes
NF	0.47
%ile	70.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	91.3	0.96	1610370_s_at	CB975555	hypothetical protein LOC100243953	-	1e+0	At5g22430	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.96	1617350_at	CB975555	hypothetical protein LOC100243953	-	1e+0	At5g22430	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.96	1609022_at	CF371738	hypothetical protein LOC100250008	-	1e+0	At4g13690	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.96	1621911_at	CF214080	hypothetical protein LOC100252396	-	3e-64	At3g15060	AtRABA1g (Arabidopsis Rab GTPase homolog A1g)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1616767_at	CF213759	hypothetical protein LOC100259220	-	4e+0	At4g03298	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1618413_at	BQ797853	hypothetical protein LOC100256600	-	0	At4g14960	TUA6	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.97	1619687_at	CD798741	hypothetical protein LOC100242388	-	2e+0	At5g53880	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.96	1616858_at	BQ798567	hypothetical protein LOC100252226 /// hypothetical protein LOC100254728	-	4e-3	At3g12740	ALIS1 (ALA-INTERACTING SUBUNIT 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.9	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.7	96.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage