Co-expression analysis

Gene ID 1610364_at
Gene name hypothetical protein LOC100256105
Homology with ArabidopsisSimilar to At5g15080: protein kinase, putative (HF=4e-10)
Module size 6 genes
NF 0.28
%ile 39.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.50.931610364_atBM437363hypothetical protein LOC100256105-4e-10At5g15080protein kinase, putativeO.I.H.G.S.X.
0.4464.10.941609486_atCF207907hypothetical protein LOC100246625-7e-47At3g51670SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinO.I.H.G.S.X.
0.3345.70.951608328_s_atCF609703hypothetical protein LOC100257331-3e-2At1g75388CPuORF5 (Conserved peptide upstream open reading frame 5)O.I.H.G.S.X.
0.2937.70.931607615_atCB349949hypothetical protein LOC100263240-3e-4At3g54990SMZ (SCHLAFMUTZE)O.I.H.G.S.X.
0.1718.20.941618465_atCB918507hypothetical protein LOC100252099-2e-39At5g14640SK13 (SHAGGY-LIKE KINASE 13)O.I.H.G.S.X.
0.1414.40.931608936_atCF214634hypothetical protein LOC100246361-1e-25At1g05805basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.099.1GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
6.698.9GSM299456C_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.896.4GSM299459D_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.696.0GSM147710Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation39Link to GEO
3.595.7GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO
3.194.6GSM147741Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation70Link to GEO
3.094.2GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
2.993.8GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.993.8GSM147720Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation49Link to GEO
2.893.4GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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