Co-expression analysis

Gene ID	1610363_at
Gene name	hypothetical protein LOC100267452
Homology with Arabidopsis	Similar to At3g62150: PGP21 (P-GLYCOPROTEIN 21) (HF=9e-32)
Module size	6 genes
NF	0.60
%ile	86.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.90	1610363_at	CB979583	hypothetical protein LOC100267452	-	9e-32	At3g62150	PGP21 (P-GLYCOPROTEIN 21)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.93	1609744_at	CF203760.1	hypothetical protein LOC100240811 /// hypothetical protein LOC100263073	-	2e+0	At3g42630	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.93	1622670_s_at	CF207059.1	hypothetical protein LOC100242012	-	1e+1	At5g05590	PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.90	1610600_at	CA813949	hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829	-	3e-1	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.92	1609397_at	CF512090	hypothetical protein LOC100248717	-	1e-35	At5g64300	ATGCH	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.93	1618355_at	CB837772	-	-	1e+0	At2g16750	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.4	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
2.6	92.5	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
2.5	91.9	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
2.1	89.1	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21

Inter-species module comparison

A co-expression module including the maize gene, Zm.6340.1.A1_at, orthologous to the query gene, 1610363_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	Zm.6340.1.A1_at	At3g62150	-	-	1e+0	At4g39730	lipid-associated family protein	O.I.	H.G.	S.X.	Please select
0.83	95.6	ZmAffx.486.1.A1_at	At3g62150	-	-	3e+0	At5g14800	P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.57	75.1	ZmAffx.457.1.S1_at	At3g62150	-	-	3e+0	At4g20470	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.9364.1.A1_at	At3g62150	-	-	6e+0	At4g29540	bacterial transferase hexapeptide repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	ZmAffx.1192.1.A1_at	At3g62150	-	-	6e+0	At3g53650	histone H2B, putative	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.5457.1.A1_at	At3g62150	hypothetical protein LOC100275951	-	5e+0	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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