Co-expression analysis

Gene ID 1610363_at
Gene name hypothetical protein LOC100267452
Homology with ArabidopsisSimilar to At3g62150: PGP21 (P-GLYCOPROTEIN 21) (HF=9e-32)
Module size 6 genes
NF 0.60
%ile 86.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6384.30.901610363_atCB979583hypothetical protein LOC100267452-9e-32At3g62150PGP21 (P-GLYCOPROTEIN 21)O.I.H.G.S.X.
0.7390.80.931609744_atCF203760.1hypothetical protein LOC100240811 /// hypothetical protein LOC100263073-2e+0At3g42630pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.6787.90.931622670_s_atCF207059.1hypothetical protein LOC100242012-1e+1At5g05590PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2)O.I.H.G.S.X.
0.5375.20.901610600_atCA813949hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829-3e-1At3g08580AAC1 (ADP/ATP CARRIER 1)O.I.H.G.S.X.
0.4464.10.921609397_atCF512090hypothetical protein LOC100248717-1e-35At5g64300ATGCHO.I.H.G.S.X.
0.3650.70.931618355_atCB837772--1e+0At2g16750protein kinase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.893.4GSM436419V. riparia (VR, PI588259) SD, 13h 14 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM147687Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation16Link to GEO
2.692.5GSM147693Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation22Link to GEO
2.591.9GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436353Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM147686Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation15Link to GEO
2.189.1GSM436381Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM147692Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation21Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig21298_at, orthologous to the query gene, 1610363_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7589.5Contig21298_atAt3g62150--2e-2At4g01830PGP5 (P-GLYCOPROTEIN 5)O.I.H.G.S.X.
0.6784.7Contig13549_atAt3g62150--2e+0At3g2023050S ribosomal protein L18 familyO.I.H.G.S.X.
0.6581.4Contig11497_atAt3g62150--8e-1At2g37300unknown proteinO.I.H.G.S.X.
0.5674.3Contig23540_atAt3g62150--2e+1At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.5470.3Contig12862_atAt3g62150--4e-2At3g58570DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.5470.3Contig8623_s_atAt3g62150--2e+0At4g00960protein kinase family proteinO.I.H.G.S.X.
0.5369.7Contig11444_atAt3g62150--3e-18At1g63780IMP4O.I.H.G.S.X.
0.5369.7Contig18583_atAt3g62150beta-ketoacyl-ACP synthase I-2e-51At5g46290KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)O.I.H.G.S.X.
0.5066.9Contig991_atAt3g62150--2e+0At3g56540serine carboxypeptidase, putativeO.I.H.G.S.X.
0.4863.2Contig7675_atAt3g62150--2e+0At4g19840ATPP2-A1O.I.H.G.S.X.
0.4762.2Contig15558_atAt3g62150--1e+0At1g12080unknown proteinO.I.H.G.S.X.
0.4053.1Contig17399_atAt3g62150--3e-1At3g51210flavonol 3-sulfotransferase-relatedO.I.H.G.S.X.
0.4053.1Contig18458_atAt3g62150--1e+0At2g27180unknown proteinO.I.H.G.S.X.
0.4053.1HVSMEl0009I21r2_atAt3g62150--1e+1At4g18230-O.I.H.G.S.X.
0.3240.3Contig13464_atAt3g62150--8e-1At1g77650F-box family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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