Co-expression analysis

Gene ID 1610328_at
Gene name hypothetical protein LOC100263661
Homology with ArabidopsisSimilar to At3g16857: ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1) (HF=6e-22)
Module size 9 genes
NF 0.18
%ile 26.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6384.30.931610328_atCD800027hypothetical protein LOC100263661-6e-22At3g16857ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)O.I.H.G.S.X.
0.3650.70.951621401_atCF210089hypothetical protein LOC100245378-2e-18At5g17640unknown proteinO.I.H.G.S.X.
0.3345.70.961621222_atCF604570hypothetical protein LOC100250708-2e-3At1g47056VFB1 (VIER F-BOX PROTEINE 1)O.I.H.G.S.X.
0.2937.70.951619241_atBQ793371hypothetical protein LOC100250554-3e-37At4g17900zinc-binding family proteinO.I.H.G.S.X.
0.2632.00.941615346_atBQ798326hypothetical protein LOC100246049-2e-7At1g72160SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinO.I.H.G.S.X.
0.1819.40.951619882_atCF604338hypothetical protein LOC100265088-9e-17At5g08080SYP132 (SYNTAXIN OF PLANTS 132)O.I.H.G.S.X.
0.1212.10.951616274_atCB971992hypothetical protein LOC100258912-7e-46At2g47070SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1)O.I.H.G.S.X.
0.1212.10.951610597_atBQ800069hypothetical protein LOC100251901-2e-9At2g24100unknown proteinO.I.H.G.S.X.
0.088.50.951607595_atCB919699similar to serine/threonine protein phosphatase 1; PP1-5e-43At2g39840TOPP4O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.799.8GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
4.196.9GSM299456C_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.390.7GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69Link to GEO
1.784.7GSM287903Red soft berry A7 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.683.3GSM147723Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation52Link to GEO
1.683.3GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.683.3GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
1.683.3GSM436376Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.683.3GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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