Co-expression analysis

Gene ID	1610321_s_at
Gene name	hypothetical protein LOC100251531
Homology with Arabidopsis	Similar to At1g64230: ubiquitin-conjugating enzyme, putative (HF=9e-55)
Module size	8 genes
NF	0.56
%ile	83.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	0.98	1610321_s_at	CB980394	hypothetical protein LOC100251531	-	9e-55	At1g64230	ubiquitin-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.98	1615468_s_at	CB973730	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase	-	8e-50	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1608723_at	CB977157	hypothetical protein LOC100261604	-	3e-5	At5g22040	-	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.98	1613658_at	CD801951	hypothetical protein LOC100244785	-	4e-4	At2g02970	nucleoside phosphatase family protein / GDA1/CD39 family protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1610822_at	BQ794756	hypothetical protein LOC100251604	-	1e-3	At4g17720	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.99	1622597_at	CF212895	hypothetical protein LOC100244242	-	1e-4	At3g43520	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.98	1620253_at	CB977519	hypothetical protein LOC100259757	-	0	At3g05530	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.99	1618305_at	CF208004	hypothetical protein LOC100256855	-	3e-73	At2g26990	FUS12 (FUSCA 12)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.2	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6	96.0	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.5	95.7	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.4	91.3	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.1	89.1	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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