Co-expression analysis

Gene ID	1610292_at
Gene name	hypothetical protein LOC100255417
Homology with Arabidopsis	Similar to At5g26360: chaperonin, putative (HF=3e-50)
Module size	17 genes
NF	0.39
%ile	57.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	88.3	0.96	1610292_at	CB345949	hypothetical protein LOC100255417	-	3e-50	At5g26360	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.97	1616242_at	CF213196	hypothetical protein LOC100263350	-	2e-1	At4g18500	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.96	1620772_at	CF607066	hypothetical protein LOC100252015	-	3e-26	At5g53620	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.97	1620897_at	CF603365	similar to F-box-containing protein 2	-	3e-4	At1g06110	SKIP16 (SKP1/ASK-interacting protein 16)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1612774_at	CF210198	hypothetical protein LOC100261536	-	2e+0	At5g40900	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1609180_at	CD719738	hypothetical protein LOC100252789	-	3e-32	At5g27620	CYCH	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.97	1607886_at	CF604620	hypothetical protein LOC100255368	-	1e-9	At3g19760	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.98	1620627_at	CF214379	hypothetical protein LOC100259195	-	1e-22	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	1619392_at	CF513478	hypothetical protein LOC100259847	-	4e+0	At3g24060	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.97	1609918_at	CF414641	hypothetical protein LOC100259885	-	1e-1	At3g55460	SCL30	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.97	1615617_at	CF603834	hypothetical protein LOC100249849	-	2e+0	At2g05370	-	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.98	1618883_at	CB970126	hypothetical protein LOC100262467	-	1e-47	At3g57650	LPAT2	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1609756_at	CF604406	hypothetical protein LOC100263684	-	6e-3	At1g18830	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1612204_at	CB921241	hypothetical protein LOC100256288	-	1e-47	At3g03110	XPO1B	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1617936_at	BQ797736	similar to 26S proteasome subunit RPN5b	-	3e-23	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.98	1615105_s_at	CF568901	hypothetical protein LOC100256979	-	0	At1g07930	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1609849_at	CF211455	similar to methyltransferase WBSCR22	-	2e-2	At1g30190	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.2	89.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.1	89.1	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.9	87.2	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.7	84.7	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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