Co-expression analysis

Gene ID 1610274_at
Gene name
Homology with ArabidopsisSimilar to At1g50440: zinc finger (C3HC4-type RING finger) family protein (HF=3e+0)
Module size 6 genes
NF 0.01
%ile 1.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.701610274_atCB344448--3e+0At1g50440zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1010.30.941610127_atCB920325--1e-1At3g15355UBC25 (UBIQUITIN-CONJUGATING ENZYME 25)O.I.H.G.S.X.
0.034.20.941611551_atCD713530--2e-24At2g17410ARID/BRIGHT DNA-binding domain-containing proteinO.I.H.G.S.X.
0.023.20.941614482_atCF206009.1hypothetical protein LOC100241833-2e-21At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.H.G.S.X.
-0.50.871607129_atCA809446--2e-1At2g04380unknown proteinO.I.H.G.S.X.
-0.50.901614253_atCB971268hypothetical protein LOC100252844-5e-15At4g02610tryptophan synthase, alpha subunit, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.696.0GSM147720Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation49Link to GEO
3.495.5GSM436351Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.495.5GSM147708Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation37Link to GEO
2.591.9GSM299452B_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.491.3GSM299451B_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.390.7GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
2.289.9GSM436367Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436413V. riparia (VR, PI588259) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436414V. riparia (VR, PI588259) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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