Co-expression analysis

Gene ID	1610255_at
Gene name
Homology with Arabidopsis	Similar to At4g26570: ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3) (HF=3e+0)
Module size	23 genes
NF	0.27
%ile	38.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	0.93	1610255_at	BQ800016	-	-	3e+0	At4g26570	ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.93	1607736_at	BQ799155	-	-	8e-1	At3g12480	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.94	1616401_at	CF213677	hypothetical protein LOC100263582	-	4e-1	At5g07430	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.95	1607820_at	CB975566	-	-	6e+0	At3g47836	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.94	1619447_at	BQ794704	-	-	4e+0	At5g65730	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.95	1619805_at	CB976900	similar to leucine-rich repeat protein-related	-	4e-9	At1g25570	leucine-rich repeat protein-related	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.95	1612278_at	CF074615	hypothetical protein LOC100241738	-	7e-1	At5g37380	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1619939_at	CB971326	-	-	2e+1	At5g43430	ETFBETA	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.95	1619332_at	CF202464.1	hypothetical protein LOC100257476	-	1e+0	Atmg00450	-	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.95	1614669_at	CF513785	-	-	1e+0	At2g15390	FUT4	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.96	1609811_at	CF208639	-	-	4e+0	At5g37850	SOS4 (SALT OVERLY SENSITIVE 4)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.95	1614056_at	CB983124	-	-	6e-2	At5g28090	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.95	1609019_at	CB973371	similar to predicted protein	-	2e-1	At3g61250	AtMYB17 (myb domain protein 17)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.96	1617552_at	CF202269.1	hypothetical protein LOC100243817	-	4e-35	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.95	1621486_at	CB970356	-	-	2e+0	At5g50840	-	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.96	1621651_at	CB345580	-	-	1e+0	At4g01310	ribosomal protein L5 family protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.97	1621992_s_at	BQ793824	hypothetical protein LOC100259183	-	2e-11	At5g66290	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.96	1620646_at	CF405313	hypothetical protein LOC100267710	-	1e-3	At2g18465	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.95	1619675_at	CB970205	-	-	5e-18	At5g16715	EMB2247 (embryo defective 2247)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.96	1622017_at	BQ106735	hypothetical protein LOC100241648	-	4e-34	At1g74910	ADP-glucose pyrophosphorylase family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1619170_at	CD802165	hypothetical protein LOC100249188	-	6e-12	At5g64500	membrane protein-related	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.95	1619233_at	CF405526	-	-	2e-1	At1g44790	ChaC-like family protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.94	1618972_at	CA817475	hypothetical protein LOC100257554	-	1e+0	At3g23175	lesion inducing protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.1	89.1	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.7	84.7	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.6	83.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.6	83.3	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
1.6	83.3	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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