Co-expression analysis

Gene ID	1610206_at
Gene name	hypothetical protein LOC100241377
Homology with Arabidopsis	Similar to At3g10340: PAL4 (Phenylalanine ammonia-lyase 4) (HF=2e-29)
Module size	20 genes
NF	0.24
%ile	34.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	91.3	0.90	1610206_at	CF511227	hypothetical protein LOC100241377	-	2e-29	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.95	1613004_s_at	CF213768	hypothetical protein LOC100266950	-	3e-2	At5g40630	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.94	1618362_s_at	CF200684.1	hypothetical protein LOC100255189	-	2e-74	At1g10670	ACLA-1	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.93	1619357_at	CB972316	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase	-	3e-71	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.94	1621754_at	CF213263	hypothetical protein LOC100253148	-	4e-9	At2g22670	IAA8	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.94	1620651_at	CF214766	hypothetical protein LOC100248095	-	2e-2	At1g52760	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.94	1616254_a_at	CF210000	hypothetical protein LOC100261951	-	1e+0	At3g52800	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.96	1618440_s_at	CD801284	hypothetical protein LOC100256565	-	2e-2	At5g15600	SP1L4 (SPIRAL1-LIKE4)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.96	1621689_at	CF212507	hypothetical protein LOC100263819	-	3e-70	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.93	1613917_s_at	CF403338	hypothetical protein LOC100248555	-	1e-1	At3g05300	cytidine/deoxycytidylate deaminase family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.96	1611799_at	CB982194	hypothetical protein LOC100255639	-	4e-4	At5g06700	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.97	1612766_s_at	CF569219.1	hypothetical protein LOC100263819	-	4e+0	At2g20310	RIN13 (RPM1 INTERACTING PROTEIN 13)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1613567_at	CB971370	-	-	3e-2	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.95	1615211_at	BQ797462	hypothetical protein LOC100267901	-	3e-8	At2g26280	CID7	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.95	1608238_at	BQ800567	hypothetical protein LOC100247004	-	1e+0	At1g56660	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.95	1614440_at	BQ796922	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	-	2e-53	At4g39980	DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.95	1615875_at	CB981816	hypothetical protein LOC100262865	-	6e-2	At3g01516	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.97	1609007_at	CB003639	hypothetical protein LOC100240979	-	5e-27	At4g30210	ATR2 (ARABIDOPSIS P450 REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.96	1621863_at	CB972344	hypothetical protein LOC100253181	-	8e-2	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.95	1622350_at	CF210825	-	-	7e-6	At5g46340	O-acetyltransferase-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	91.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.5	91.9	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.2	89.9	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
1.9	87.2	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
1.8	86.0	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
1.8	86.0	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
1.8	86.0	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.8	86.0	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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