Co-expression analysis

Gene ID	1610169_at
Gene name	hypothetical protein LOC100250570
Homology with Arabidopsis	Similar to At2g22570: NIC1 (NICOTINAMIDASE 1) (HF=1e-4)
Module size	7 genes
NF	0.19
%ile	27.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.91	1610169_at	BQ797205	hypothetical protein LOC100250570	-	1e-4	At2g22570	NIC1 (NICOTINAMIDASE 1)	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.91	1622563_at	CF514103	hypothetical protein LOC100248493	-	1e-15	At3g12800	SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1608565_at	CA817135	hypothetical protein LOC100247719	-	1e+0	At4g13200	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.91	1621790_at	CF214824	hypothetical protein LOC100254475	-	5e+0	At1g67440	emb1688 (embryo defective 1688)	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.91	1608337_at	BQ792532	hypothetical protein LOC100260571	-	2e-15	At5g66110	metal ion binding	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.92	1613103_at	CD802483	hypothetical protein LOC100249419	-	3e+0	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.91	1617802_at	BQ793493	hypothetical protein LOC100248493	-	9e-11	At2g07640	D2,D4-dienoyl-CoA reductase-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.4	91.3	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.0	88.2	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.7	84.7	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44
1.7	84.7	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.7	84.7	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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