CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1610068_at

Gene name hypothetical protein LOC100252154
Homology with Arabidopsis Similar to At2g36670: aspartyl protease family protein (HF=2e-19)

Module size 6 genes

NF 0.47

%ile 70.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.95 1610068_at CD711769 hypothetical protein LOC100252154 - 2e-19 At2g36670 aspartyl protease family protein O.I. H.G. S.X.
0.50 72.7 0.95 1615815_at CF207323 similar to ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) - 5e-23 At3g49290 ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2) O.I. H.G. S.X.
0.50 72.7 0.96 1617328_at CF214435 hypothetical protein LOC100247950 - 8e-43 At4g36750 quinone reductase family protein O.I. H.G. S.X.
0.46 66.5 0.95 1620542_at CB344230 hypothetical protein LOC100255788 - 9e-31 At2g16800 high-affinity nickel-transport family protein O.I. H.G. S.X.
0.33 45.7 0.95 1607286_at CF207311 hypothetical protein LOC100267511 - 3e-69 At3g12150 unknown protein O.I. H.G. S.X.
0.26 32.0 0.95 1620426_at CF515986 similar to DNA-binding protein - 1e-20 At1g13960 WRKY4 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	0.92	1609723_at	CF206143.1	-	-	1e+0	At5g11150	ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)	O.I.	H.G.	S.X.
0.50	72.7	0.93	1618543_at	BQ792450	hypothetical protein LOC100263765	-	3e-8	At5g01710	-	O.I.	H.G.	S.X.
0.48	68.8	0.92	1614506_at	CD801364	hypothetical protein LOC100241962	-	1e+0	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	O.I.	H.G.	S.X.
0.44	64.1	0.96	1616579_at	CF514965	hypothetical protein LOC100260111	-	6e-2	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	O.I.	H.G.	S.X.
0.40	57.7	0.91	1617572_at	CB918599	hypothetical protein LOC100251967	-	3e-17	At3g61460	BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2)	O.I.	H.G.	S.X.
0.40	57.7	0.92	1615511_at	CF404471	hypothetical protein LOC100249393	-	1e+0	At5g25210	unknown protein	O.I.	H.G.	S.X.
0.40	57.7	0.93	1616933_at	CB345010	hypothetical protein LOC100265903	-	1e-13	At1g02920	GSTF7	O.I.	H.G.	S.X.
0.40	57.7	0.94	1622282_at	CD712313	hypothetical protein LOC100245852	-	2e-10	At1g06020	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.
0.38	53.6	0.91	1621405_at	CF517917	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	-	3e-4	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.
0.35	48.5	0.94	1608970_s_at	CF206450.1	-	-	7e-1	At4g02810	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	0.87	1622515_at	CD721735	-	-	3e-4	At1g53910	RAP2.12	O.I.	H.G.	S.X.
0.33	45.7	0.92	1617093_at	CF519144	hypothetical protein LOC100241671	-	4e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.
0.33	45.7	0.93	1610530_at	CB971103	hypothetical protein LOC100243696	-	7e-34	At4g02630	protein kinase family protein	O.I.	H.G.	S.X.
0.31	41.3	0.95	1613676_at	CB002629	hypothetical protein LOC100266011	-	4e+0	At3g19200	unknown protein	O.I.	H.G.	S.X.
0.30	39.4	0.94	1615664_at	CA809363	hypothetical protein LOC100264293	-	4e+0	At3g10116	unknown protein	O.I.	H.G.	S.X.
0.28	37.7	0.94	1620014_at	CF210422	hypothetical protein LOC100261066	-	3e-13	At2g43340	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.93	1611362_at	CF516837	hypothetical protein LOC100250835	-	2e-3	At4g25150	acid phosphatase, putative	O.I.	H.G.	S.X.
0.27	34.0	0.95	1608328_s_at	CF609703	hypothetical protein LOC100257331	-	3e-2	At1g75388	CPuORF5 (Conserved peptide upstream open reading frame 5)	O.I.	H.G.	S.X.
0.26	32.0	0.90	1616581_at	CF518691	hypothetical protein LOC100262490	-	1e+0	At5g27290	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.3 99.4 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.8 99.3 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.3 99.2 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.0 99.1 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.7 99.0 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.7 99.0 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.3 98.8 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.3 98.8 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9 98.6 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4 97.3 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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