Co-expression analysis

Gene ID	1610068_at
Gene name	hypothetical protein LOC100252154
Homology with Arabidopsis	Similar to At2g36670: aspartyl protease family protein (HF=2e-19)
Module size	6 genes
NF	0.47
%ile	70.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.95	1610068_at	CD711769	hypothetical protein LOC100252154	-	2e-19	At2g36670	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1615815_at	CF207323	similar to ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	-	5e-23	At3g49290	ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1617328_at	CF214435	hypothetical protein LOC100247950	-	8e-43	At4g36750	quinone reductase family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1620542_at	CB344230	hypothetical protein LOC100255788	-	9e-31	At2g16800	high-affinity nickel-transport family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1607286_at	CF207311	hypothetical protein LOC100267511	-	3e-69	At3g12150	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.95	1620426_at	CF515986	similar to DNA-binding protein	-	1e-20	At1g13960	WRKY4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	99.4	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.8	99.3	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.3	99.2	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.0	99.1	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.7	99.0	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.7	99.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.3	98.8	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.3	98.8	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9	98.6	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4	97.3	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

A co-expression module including the maize gene, Zm.11815.2.A1_at, orthologous to the query gene, 1610068_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	Zm.11815.2.A1_at	At2g36670	-	-	5e-1	At2g07706	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.16785.2.S1_at	At2g36670	Ubiquitin-conjugating enzyme protein E2	-	6e-1	At5g46860	VAM3	O.I.	H.G.	S.X.	Please select
0.52	67.3	Zm.1735.1.S1_at	At2g36670	photosystem I reaction center subunit III	-	2e-10	At1g31330	PSAF (photosystem I subunit F)	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.6748.1.A1_at	At2g36670	Ribosomal protein L26	-	1e-4	At3g49910	60S ribosomal protein L26 (RPL26A)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.10060.1.A1_at	At2g36670	hypothetical protein LOC100217199	-	9e-18	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.13206.1.S1_at	At2g36670	hypothetical protein LOC100192621	-	3e+0	At5g67490	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.3712.1.S1_at	At2g36670	Hypothetical protein LOC100216583	-	6e-2	At1g69430	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.18297.1.S1_at	At2g36670	hypothetical protein LOC100216767	-	1e-27	At3g54050	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.1566.1.A1_at	At2g36670	-	-	8e-1	At1g75220	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.13703.1.A1_at	At2g36670	peptide methionine sulfoxide reductase	-	9e-3	At5g61640	PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.18247.1.S1_at	At2g36670	Hypothetical protein LOC100192004	-	2e-30	At4g17190	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.7868.1.S1_at	At2g36670	hypothetical protein LOC100216779	-	4e-1	At1g15390	PDF1A (PEPTIDE DEFORMYLASE 1A)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.6941.1.A1_at	At2g36670	-	-	4e-1	At3g46770	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.8568.1.S1_at	At2g36670	-	-	2e+0	At1g06790	RNA polymerase Rpb7 N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.16076.1.S1_at	At2g36670	hypothetical protein LOC100191361	-	8e-4	At5g63220	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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