Co-expression analysis

Gene ID	1610068_at
Gene name	hypothetical protein LOC100252154
Homology with Arabidopsis	Similar to At2g36670: aspartyl protease family protein (HF=2e-19)
Module size	6 genes
NF	0.47
%ile	70.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.95	1610068_at	CD711769	hypothetical protein LOC100252154	-	2e-19	At2g36670	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1615815_at	CF207323	similar to ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	-	5e-23	At3g49290	ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1617328_at	CF214435	hypothetical protein LOC100247950	-	8e-43	At4g36750	quinone reductase family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1620542_at	CB344230	hypothetical protein LOC100255788	-	9e-31	At2g16800	high-affinity nickel-transport family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1607286_at	CF207311	hypothetical protein LOC100267511	-	3e-69	At3g12150	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.95	1620426_at	CF515986	similar to DNA-binding protein	-	1e-20	At1g13960	WRKY4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	99.4	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.8	99.3	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.3	99.2	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.0	99.1	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.7	99.0	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.7	99.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.3	98.8	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.3	98.8	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9	98.6	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4	97.3	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.1896.1.S1_at, orthologous to the query gene, 1610068_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	Ta.1896.1.S1_at	At2g36670	-	-	1e+0	At5g01980	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	Ta.18958.1.S1_at	At2g36670	-	-	8e-1	At4g10115	SCRL20 (SCR-Like 20)	O.I.	H.G.	S.X.	Please select
0.69	86.9	Ta.5299.1.S1_s_at	At2g36670	-	-	2e-2	At5g23750	remorin family protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.5510.1.S1_at	At2g36670	-	-	5e-2	At5g13700	ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1)	O.I.	H.G.	S.X.	Please select
0.65	83.9	Ta.13153.1.S1_s_at	At2g36670	-	-	1e+0	At5g05060	-	O.I.	H.G.	S.X.	Please select
0.65	83.9	Ta.18825.1.S1_at	At2g36670	-	-	1e+1	At5g38490	DNA binding	O.I.	H.G.	S.X.	Please select
0.64	83.6	Ta.1807.1.S1_at	At2g36670	-	-	6e+0	At5g36925	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	Ta.5805.1.S1_at	At2g36670	-	-	6e+0	At3g31400	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	Ta.1807.1.S1_x_at	At2g36670	-	-	6e+0	At5g36925	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	Ta.16173.1.S1_at	At2g36670	-	-	6e-1	At1g29500	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.59	79.8	Ta.16474.1.S1_at	At2g36670	-	-	7e+0	At5g53895	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	75.5	Ta.26259.1.S1_at	At2g36670	-	-	4e+0	At2g32360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.8788.1.A1_at	At2g36670	-	-	9e+0	At5g44060	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.5265.1.S1_x_at	At2g36670	-	-	6e+0	At4g10940	PHD finger family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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