Co-expression analysis

Gene ID	1610068_at
Gene name	hypothetical protein LOC100252154
Homology with Arabidopsis	Similar to At2g36670: aspartyl protease family protein (HF=2e-19)
Module size	6 genes
NF	0.47
%ile	70.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.95	1610068_at	CD711769	hypothetical protein LOC100252154	-	2e-19	At2g36670	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1615815_at	CF207323	similar to ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	-	5e-23	At3g49290	ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1617328_at	CF214435	hypothetical protein LOC100247950	-	8e-43	At4g36750	quinone reductase family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1620542_at	CB344230	hypothetical protein LOC100255788	-	9e-31	At2g16800	high-affinity nickel-transport family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1607286_at	CF207311	hypothetical protein LOC100267511	-	3e-69	At3g12150	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.95	1620426_at	CF515986	similar to DNA-binding protein	-	1e-20	At1g13960	WRKY4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	99.4	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.8	99.3	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.3	99.2	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.0	99.1	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.7	99.0	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.7	99.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.3	98.8	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.3	98.8	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9	98.6	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4	97.3	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.742.1.A1_at, orthologous to the query gene, 1610068_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	94.1	Ptp.742.1.A1_at	At2g36670	hypothetical protein	-	1e-10	At2g36670	aspartyl protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	Ptp.7476.1.A1_s_at	At2g36670	hypothetical protein	-	4e-42	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	Ptp.2453.1.S1_at	At2g36670	hypothetical protein	-	2e-28	At5g52240	MSBP1 (membrane steroid binding protein 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	Ptp.4943.1.S1_at	At2g36670	hypothetical protein	-	2e-99	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.4784.1.A1_s_at	At2g36670	hypothetical protein	-	8e+0	At5g27290	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.43571.1.S1_at	At2g36670	hypothetical protein	-	2e-23	At2g39630	glycosyl transferase family 2 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.6505.1.A1_s_at	At2g36670	hypothetical protein	-	2e-36	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.1258.4.S1_s_at	At2g36670	actin 1 /// actin 9	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	PtpAffx.2288.2.A1_s_at	At2g36670	-	-	3e-58	At5g56010	HSP81-3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.5592.1.S1_at	At2g36670	hypothetical protein	-	5e-82	At5g38480	GRF3 (GENERAL REGULATORY FACTOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.1199.1.A1_at	At2g36670	hypothetical protein	-	1e-20	At5g38470	DNA repair protein RAD23, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.1447.3.S1_s_at	At2g36670	hypothetical protein	-	2e+1	At5g60290	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	Ptp.5444.1.S1_x_at	At2g36670	hypothetical protein	-	6e-121	At5g20010	RAN-1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.4277.1.S1_a_at	At2g36670	-	-	1e-131	At3g02520	GRF7 (GENERAL REGULATORY FACTOR 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.92886.1.S1_at	At2g36670	hypothetical protein	-	2e-7	At1g28120	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	Ptp.2402.1.S1_s_at	At2g36670	hypothetical protein	-	3e-8	At4g32560	paramyosin-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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