CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1610068_at

Gene name hypothetical protein LOC100252154
Homology with Arabidopsis Similar to At2g36670: aspartyl protease family protein (HF=2e-19)

Module size 6 genes

NF 0.47

%ile 70.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.95 1610068_at CD711769 hypothetical protein LOC100252154 - 2e-19 At2g36670 aspartyl protease family protein O.I. H.G. S.X.
0.50 72.7 0.95 1615815_at CF207323 similar to ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) - 5e-23 At3g49290 ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2) O.I. H.G. S.X.
0.50 72.7 0.96 1617328_at CF214435 hypothetical protein LOC100247950 - 8e-43 At4g36750 quinone reductase family protein O.I. H.G. S.X.
0.46 66.5 0.95 1620542_at CB344230 hypothetical protein LOC100255788 - 9e-31 At2g16800 high-affinity nickel-transport family protein O.I. H.G. S.X.
0.33 45.7 0.95 1607286_at CF207311 hypothetical protein LOC100267511 - 3e-69 At3g12150 unknown protein O.I. H.G. S.X.
0.26 32.0 0.95 1620426_at CF515986 similar to DNA-binding protein - 1e-20 At1g13960 WRKY4 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.3 99.4 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.8 99.3 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.3 99.2 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.0 99.1 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.7 99.0 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.7 99.0 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.3 98.8 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.3 98.8 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9 98.6 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4 97.3 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

A co-expression module including the rice gene, Os01g0777200, orthologous to the query gene, 1610068_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 Os01g0777200 At2g36670 - Peptidase A1, pepsin family protein 6e-2 At2g36670 aspartyl protease family protein O.I. H.G. S.X.
0.28 31.1 Os02g0780700 At2g36670 - Lipase, class 3 family protein 4e-10 At3g14075 lipase class 3 family protein O.I. H.G. S.X.
0.17 12.6 Os03g0177000 At2g36670 - GCN5-related N-acetyltransferase domain containingprotein 7e-1 At2g37340 RSZ33 O.I. H.G. S.X.
0.11 6.5 Os05g0408300 At2g36670 - Conserved hypothetical protein 2e-4 At1g10740 unknown protein O.I. H.G. S.X.
0.09 4.9 Os07g0568600 At2g36670 - Calcium-dependent protein kinase 4e-25 At2g41860 CPK14 O.I. H.G. S.X.
0.07 3.7 Os06g0663200 At2g36670 - Protein kinase APK1A (EC 2.7.1.-) 3e-10 At3g28690 protein kinase, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage