Co-expression analysis

Gene ID	1610046_at
Gene name	hypothetical protein LOC100263361
Homology with Arabidopsis	Similar to At1g68990: DNA-directed RNA polymerase, mitochondrial (RPOMT) (HF=2e-14)
Module size	13 genes
NF	0.27
%ile	38.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.7	0.96	1610046_at	CB001705	hypothetical protein LOC100263361	-	2e-14	At1g68990	DNA-directed RNA polymerase, mitochondrial (RPOMT)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1613569_at	CB982639	hypothetical protein LOC100241131	-	9e-2	At1g15440	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.97	1608766_at	CB972419	hypothetical protein LOC100265604	-	7e-133	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.98	1607128_at	CF513398	hypothetical protein LOC100249973	-	8e-2	At1g79780	-	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1620106_at	CF511459	hypothetical protein LOC100262007	-	3e-7	At5g52820	WD-40 repeat family protein / notchless protein, putative	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1617878_at	CF510921	hypothetical protein LOC100258943	-	3e-85	At2g47110	UBQ6	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1612821_at	CF405899	hypothetical protein LOC100249429	-	2e-1	At5g27540	MIRO1 (Miro-related GTP-ase 1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.99	1610663_at	CF207750	hypothetical protein LOC100260286	-	0	At5g19770	TUA3	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.99	1620700_at	BQ799947	hypothetical protein LOC100261522	-	4e-20	At1g30230	elongation factor 1-beta / EF-1-beta	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1621518_at	CF414303	hypothetical protein LOC100250245	-	2e-23	At1g80670	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.98	1611812_at	CB980436	hypothetical protein LOC100263785	-	4e-73	At5g20920	EIF2 BETA	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.97	1609458_at	CF513656	hypothetical protein LOC100246139	-	3e-20	At1g63660	GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.96	1617979_at	CF405111	similar to Adenylate kinase	-	3e-5	At4g25280	adenylate kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.7	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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