Co-expression analysis

Gene ID	1609989_at
Gene name
Homology with Arabidopsis	Similar to At4g08190: Ras-related GTP-binding protein, putative (HF=2e+1)
Module size	6 genes
NF	0.47
%ile	70.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.96	1609989_at	CF415187	-	-	2e+1	At4g08190	Ras-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.98	1613787_at	CF512513	hypothetical protein LOC100250201	-	4e-4	At5g24105	AGP41 (ARABINOGALACTAN-PROTEIN 41)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1617368_at	CF512540	similar to beta-1,3-glucanase	-	1e+0	At2g47110	UBQ6	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1616523_s_at	CF512513	hypothetical protein LOC100250201	-	4e-4	At5g24105	AGP41 (ARABINOGALACTAN-PROTEIN 41)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.97	1621735_at	CF512243	hypothetical protein LOC100245551	-	1e+0	At5g06660	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1616611_at	CF404283	-	-	2e-1	At2g33220	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	98.3	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.9	93.8	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
2.8	93.4	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.6	92.5	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.6	92.5	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.5	91.9	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.5	91.9	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage