CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1609986_at

Gene name hypothetical protein LOC100261396
Homology with Arabidopsis Similar to At4g05130: equilibrative nucleoside transporter, putative (ENT4) (HF=6e-2)

Module size 6 genes

NF 0.36

%ile 52.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.93 1609986_at CB349859 hypothetical protein LOC100261396 - 6e-2 At4g05130 equilibrative nucleoside transporter, putative (ENT4) O.I. H.G. S.X.
0.44 64.1 0.95 1618478_at CF515277 hypothetical protein LOC100259390 - 4e-3 At2g34850 MEE25 (maternal effect embryo arrest 25) O.I. H.G. S.X.
0.40 57.7 0.93 1609253_at CB974058 - - 4e+0 At3g30160 unknown protein O.I. H.G. S.X.
0.27 34.0 0.92 1622456_at CF609276 hypothetical protein LOC100245907 /// hypothetical protein LOC100265993 - 2e-1 At5g65870 ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR) O.I. H.G. S.X.
0.25 30.5 0.93 1610013_s_at CF213272 hypothetical protein LOC100259835 - 6e-6 At2g26530 AR781 O.I. H.G. S.X.
0.25 30.5 0.93 1612186_at CD800937 hypothetical protein LOC100241494 - 1e+1 At5g18250 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	68.8	0.91	1610821_at	CB971061	hypothetical protein LOC100253493	-	6e-48	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	O.I.	H.G.	S.X.
0.47	67.7	0.83	1622447_at	CF206004.1	-	-	2e+1	At4g39710	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	O.I.	H.G.	S.X.
0.46	66.5	0.90	1613586_at	CF513392	hypothetical protein LOC100245607	-	2e-3	At4g20830	FAD-binding domain-containing protein	O.I.	H.G.	S.X.
0.36	50.7	0.92	1617483_at	CD799044	hypothetical protein LOC100267019	-	1e+0	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.
0.35	48.5	0.91	1615744_at	BQ800032	-	-	1e+0	At3g15630	unknown protein	O.I.	H.G.	S.X.
0.23	27.5	0.88	1622395_s_at	CF514131	hypothetical protein LOC100266306	-	4e-1	At2g37870	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.21	24.0	0.88	1618276_at	CB349729	-	-	2e-2	At2g37600	60S ribosomal protein L36 (RPL36A)	O.I.	H.G.	S.X.
0.19	20.9	0.88	1618763_at	CF609703	hypothetical protein LOC100257331	-	3e-2	At1g75388	CPuORF5 (Conserved peptide upstream open reading frame 5)	O.I.	H.G.	S.X.
0.19	20.9	0.92	1616191_s_at	CB971061	hypothetical protein LOC100253493	-	6e-48	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	O.I.	H.G.	S.X.
0.19	20.9	0.86	1616698_at	CF201799.1	hypothetical protein LOC100256784	-	9e-21	At1g05010	EFE (ETHYLENE-FORMING ENZYME)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.5 99.2 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.3 99.2 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.1 98.7 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.0 98.7 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.0 98.7 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2 97.1 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2 97.1 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7 96.2 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.6 96.0 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.6 96.0 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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