CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1609986_at

Gene name hypothetical protein LOC100261396
Homology with Arabidopsis Similar to At4g05130: equilibrative nucleoside transporter, putative (ENT4) (HF=6e-2)

Module size 6 genes

NF 0.36

%ile 52.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.93 1609986_at CB349859 hypothetical protein LOC100261396 - 6e-2 At4g05130 equilibrative nucleoside transporter, putative (ENT4) O.I. H.G. S.X.
0.44 64.1 0.95 1618478_at CF515277 hypothetical protein LOC100259390 - 4e-3 At2g34850 MEE25 (maternal effect embryo arrest 25) O.I. H.G. S.X.
0.40 57.7 0.93 1609253_at CB974058 - - 4e+0 At3g30160 unknown protein O.I. H.G. S.X.
0.27 34.0 0.92 1622456_at CF609276 hypothetical protein LOC100245907 /// hypothetical protein LOC100265993 - 2e-1 At5g65870 ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR) O.I. H.G. S.X.
0.25 30.5 0.93 1610013_s_at CF213272 hypothetical protein LOC100259835 - 6e-6 At2g26530 AR781 O.I. H.G. S.X.
0.25 30.5 0.93 1612186_at CD800937 hypothetical protein LOC100241494 - 1e+1 At5g18250 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.5 99.2 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.3 99.2 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.1 98.7 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.0 98.7 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.0 98.7 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2 97.1 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2 97.1 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7 96.2 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.6 96.0 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.6 96.0 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the maize gene, Zm.9633.1.S1_at, orthologous to the query gene, 1609986_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 Zm.9633.1.S1_at At4g05130 - - 2e+1 At5g55507 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.29 28.1 ZmAffx.303.1.A1_at At4g05130 - - 1e+1 At5g07700 MYB76 (myb domain protein 76) O.I. H.G. S.X.
0.21 15.5 ZmAffx.372.1.S1_at At4g05130 - - 8e-1 At3g59680 unknown protein O.I. H.G. S.X.
0.15 8.6 Zm.2468.1.S1_at At4g05130 hypothetical protein LOC100191330 - 2e+0 At4g39190 unknown protein O.I. H.G. S.X.
0.14 7.7 ZmAffx.1119.1.S1_at At4g05130 - - 3e+0 At4g33625 unknown protein O.I. H.G. S.X.
0.13 6.8 Zm.9407.1.A1_at At4g05130 plastid-lipid-associated protein 2 - 3e-2 At4g04020 FIB (FIBRILLIN) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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