Co-expression analysis

Gene ID	1609986_at
Gene name	hypothetical protein LOC100261396
Homology with Arabidopsis	Similar to At4g05130: equilibrative nucleoside transporter, putative (ENT4) (HF=6e-2)
Module size	6 genes
NF	0.36
%ile	52.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.93	1609986_at	CB349859	hypothetical protein LOC100261396	-	6e-2	At4g05130	equilibrative nucleoside transporter, putative (ENT4)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1618478_at	CF515277	hypothetical protein LOC100259390	-	4e-3	At2g34850	MEE25 (maternal effect embryo arrest 25)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.93	1609253_at	CB974058	-	-	4e+0	At3g30160	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.92	1622456_at	CF609276	hypothetical protein LOC100245907 /// hypothetical protein LOC100265993	-	2e-1	At5g65870	ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.93	1610013_s_at	CF213272	hypothetical protein LOC100259835	-	6e-6	At2g26530	AR781	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.93	1612186_at	CD800937	hypothetical protein LOC100241494	-	1e+1	At5g18250	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	99.2	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.3	99.2	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.1	98.7	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.0	98.7	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.0	98.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2	97.1	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2	97.1	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7	96.2	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.92729.1.A1_at, orthologous to the query gene, 1609986_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.1	TaAffx.92729.1.A1_at	At4g05130	-	-	3e-1	At2g32160	-	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.4349.1.S1_at	At4g05130	-	-	6e-5	At1g53020	UBC26 (UBIQUITIN-CONJUGATING ENZYME 26)	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.5516.1.S1_at	At4g05130	-	-	2e-56	At1g63830	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.6518.1.S1_at	At4g05130	-	-	2e-5	At4g38900	bZIP protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.14082.1.S1_at	At4g05130	-	-	9e-1	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.6096.1.S1_at	At4g05130	-	-	3e-3	At1g32050	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.2888.1.S1_at	At4g05130	-	-	8e-4	At5g10730	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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