Co-expression analysis

Gene ID	1609930_at
Gene name	hypothetical LOC100243959
Homology with Arabidopsis	Similar to At5g11260: HY5 (ELONGATED HYPOCOTYL 5) (HF=3e-24)
Module size	6 genes
NF	0.08
%ile	15.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.92	1609930_at	CB340826	hypothetical LOC100243959	-	3e-24	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.97	1622268_at	CF372312	-	-	9e-16	At4g11110	SPA2 (SPA1-RELATED 2)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.96	1621150_at	CF516004	hypothetical protein LOC100248338	-	1e-8	At5g39040	ATTAP2	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.97	1607289_at	CD802115	hypothetical protein LOC100243734	-	9e-2	At3g29020	MYB110 (myb domain protein 110)	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.97	1619250_at	CF511091	-	-	1e+0	At3g55280	RPL23AB (RIBOSOMAL PROTEIN L23AB)	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.97	1609776_at	CB979308	hypothetical protein LOC100252635	-	1e-19	At1g73875	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	99.3	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
7.4	99.2	GSM436426	V. riparia (VR, PI588259) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
7.1	99.1	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.6	97.6	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, Ta.3734.1.A1_at, orthologous to the query gene, 1609930_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.3734.1.A1_at	At5g11260	-	-	2e+0	At3g42155	catalytic/ hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.20691.1.A1_at	At5g11260	-	-	6e-1	At5g39610	ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.7184.2.A1_a_at	At5g11260	-	-	3e+0	At5g36925	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.3330.2.A1_at	At5g11260	-	-	4e+0	At1g23120	major latex protein-related / MLP-related	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.21100.1.S1_at	At5g11260	-	-	1e-1	At4g02790	GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.25501.1.S1_at	At5g11260	-	-	4e-13	At3g12080	emb2738 (embryo defective 2738)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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